Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P07
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   5.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   6.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   8.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 545 PPPPXPPPXXGXGAXDPP 598
           PPPP PP   G G   PP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 545 PPPPXPPPXXGXGAXDPP 598
           PPPP PPP    GA  PP
Sbjct: 761 PPPPPPPPGVA-GAGPPP 777


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 545 PPPPXPPPXXGXGAXDPPL 601
           PPPP P P     A  PPL
Sbjct: 5   PPPPPPAPAPAAAAPAPPL 23


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 5.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 544 PPPPXPPPXXRXRG 585
           PPPP PPP     G
Sbjct: 946 PPPPPPPPLVSAAG 959



 Score = 20.6 bits (41), Expect(2) = 5.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 532 IXXXPPPPXPPP 567
           I   P PP PPP
Sbjct: 901 IITHPTPPPPPP 912


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 6.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 545 PPPPXPPP 568
           PPPP PPP
Sbjct: 306 PPPPPPPP 313



 Score = 21.0 bits (42), Expect(2) = 6.0
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = +2

Query: 656 PPPKTPXXKSXXWRKFGDP 712
           PPP  P   +  W+   +P
Sbjct: 307 PPPPPPPPSNDFWKDSNEP 325


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 161 EDEG*DLCEIHCKFM*IQRRTLRHKRRCTDHLMCTIXNVKS*GIPYSESVI 9
           E +G +   +H + + I+  TL  K   T+ L+C    +K+   PY   V+
Sbjct: 656 EQDGWEFIPVHGQQVGIRTSTLEDKCTATEMLVCYAAELKADFDPYVNEVL 706


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 545 PPPPXPPPXXGXGAXDPP 598
           PPPP PPP     +  PP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 547 PPPXPPPXXRXRG 585
           PPP PPP  R RG
Sbjct: 311 PPPPPPPSRRNRG 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,267
Number of Sequences: 5004
Number of extensions: 51061
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)