Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_P05
(1076 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.069
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.16
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.37
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.49
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.64
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 2.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 2.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 6.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 7.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 7.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect(2) = 0.001
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +3
Query: 942 LPAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPPRP 1073
+P P P PP P P PPPP PP PPP P
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGP-PPPPPPPGVAGAGPPPPPPPPP 783
Score = 33.5 bits (73), Expect = 0.052
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPPRP 1073
PA P P P P P + PPPP PPP P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 960 PXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPP 1067
P PP P P PPPA PP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +1
Query: 472 PPPPPXKKKXXPXPXSXPSPXXXXXFFFSXXXXXXFPXXPXPPXTFXXPSXPXXPPPRP 648
PPPPP P P P P P P PP P PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIM--------GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXP--PXXXPFLXXPPPPA 1031
PAP PP PP P P PPPPA
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 960 PXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPP 1067
P PP P + PPP PP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 807 PPXPPPPPPXXPXXG 851
PP PPPPPP G
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +1
Query: 991 PXXXLFSXPPPRPPXXXXXPRXPPXPAP 1074
P + PPP PP PP P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 21.0 bits (42), Expect(2) = 0.001
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 816 PPPPPP 833
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.069
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 948 APCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPPRP 1073
AP P PP P P + PP PP AP P P
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +3
Query: 816 PPPPPPXXPXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAPCXPXXPPXPPXPPX 995
PPPPPP P +P P P PP PP
Sbjct: 311 PPPPPP--PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP-PPR 367
Query: 996 XXPFLXXPPPP--AXXXXXPPXAPPP 1067
P PPP + P APPP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +3
Query: 945 PAPCXPXXPPXPPX--PPXXXPFLXXPPPPAXXXXXPPXAP--PPRP 1073
P P P PP P PP P L P A PP AP PP P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA--PPLPPSAPIAPPLP 460
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Frame = +3
Query: 951 PCXPXXPPXPPX-----PPXXXPFLXXP-----PPPAXXXXXPPXAPPPRP 1073
P PP PP PP P L P PPP+ P PPRP
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 972 PXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPPR 1070
P PP PP P PP PP PPPR
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP--PPPR 367
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Frame = +3
Query: 960 PXXPPXPPXPPXXXPFLXXPPPPAXXXXXP--PXAPPPRP 1073
P P P PP P L PP+ P P PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = +3
Query: 942 LPAPCXPXXPPXPPXPPXXXPFLXXPPP-PAXXXXXPPXAPPPRP 1073
LP P P P P P PP PA PP PP P
Sbjct: 431 LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL-PPAAP 474
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 948 APCXPXXPPXPPXPPXXXPFLXXPPPP 1028
A P PP PP PP P PPPP
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 580 PXXPXPPXTFXXPSXPXXPPP 642
P P PP F PS P PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 1017 PPPPAXXXXXPPXAPPPRP 1073
PPPP PP PPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 570 PXFPXXXXPPPNFFXXLXPPXPPP 641
P P PPP F PP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 969 PPXPPXPPXXXPFLXXPPPP 1028
PP PP P P PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.16
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPPRPT 1076
PA P PP PP P + PP P PP PP PT
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVP------PPSTAPPVPT 1221
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPP 1064
P+ P P PP P + PP PA PP P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPP 1064
P+ P P PP P PP P PP PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPP 1064
P+ P PP PP P PP P PP P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +3
Query: 942 LPAPCXPXXPPXPPX-PPXXXPFLXXPPPPAXXXXXPPXAPP 1064
+PAP P P PP P + PP P PP P
Sbjct: 1076 IPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Frame = +3
Query: 945 PAPCXPXXPPXPPX----PPXXXPFLXXPPPPAXXXXXPPXAPP-PRPT 1076
P P PP P PP P + PP PA P APP P+P+
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA-----PSGAPPVPKPS 1127
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPP-PRPT 1076
P+ P P PP P + PP PA P APP P+P+
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPA-----PSGAPPVPKPS 1165
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 942 LPAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPPPRP 1073
LP+ P P PP P P P + P APPP P
Sbjct: 1026 LPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGA--PSAPPPVP 1067
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPP-PRPT 1076
P+ P P PP P + PP P P APP P+P+
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPV-----PSGAPPVPKPS 1146
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPP 1064
P+ P P PP P PP PA P + P
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.37
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 1072 GRGGGAXGGXXXXXAGGGGXXRKGXXXGGXGGXGGXXGXHGAGR 941
G GG GG GG G R G GG GG G G GR
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGR--GGRGGARGGRGGSSGGR 64
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = -2
Query: 1072 GRGG--GAXGGXXXXXAGG--GGXXRKGXXXGGXGGXGGXXGXHGAG 944
GRGG G GG GG GG +G GG GG G G G
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Frame = -2
Query: 1072 GRGGGAXG-GXXXXXAGGGGXXRKGXXXGGXGGX---GGXXGXHGAGR 941
GRGG G G GG G R G GG GG G G GR
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR 57
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 942 LPAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAP 1061
+P P PP P P L P PA PP AP
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +3
Query: 945 PAPCXPXXPPX--PPXPPXXXPFLXXPPPPAXXXXXPPXAPPPRPT 1076
P P P P PP P P PPPA P +PP P+
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA-PVKSPPSAPS 189
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +3
Query: 945 PAPCXPXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAP 1061
P P P PP P P + PP PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +3
Query: 948 APCXPXXPPXPPXPPXXX-PFLXXPPPPAXXXXXPPXAPP 1064
A P P PP P P PP P+ P APP
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.64
Identities = 26/90 (28%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Frame = -2
Query: 1072 GRGGGAXGGXXXXXAGGGGXXRKGXXXGGXGGXGGXXGXHGA-GRXXXXXXXXXXXXXXX 896
G GG GG G GG GG GG GG HG G
Sbjct: 184 GHNGGGFGGFG---GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF 240
Query: 895 XXXXXXXXXXXXGXXPXXGXXGGGGGGXGG 806
G G GGG GG GG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 1072 GRGGGAXGGXXXXXAGGGGXXRKGXXXGGXGGXG 971
G GGG G GGG G GG GG G
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = +3
Query: 942 LPAPCXPXXPPXPPXPPXXXPFLXXP---PPPAXXXXXPPXAPPP 1067
+ AP P P P PP P P PPP P P P
Sbjct: 1702 MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 972 PXPPXPPXXXPFLXXPPPPAXXXXX-PPXA-PPPRP 1073
P PP PP P PPP A PP A PPP P
Sbjct: 1705 PTPPPPPMSVP----PPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 948 APCXPXXPPXPPXPPXXXPFLXXP-PPPAXXXXXPPXAPPPRP 1073
AP P P P + P PPP PP + PP P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 946 PRRAXPXXPXXHXXXPXXXLFSXPPPRPPXXXXXPRXPPXPAP 1074
P+ A P P PP PP P PP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 960 PXXPPXPPXPPXXXPFLXXPPPPAXXXXXPPXAPP 1064
P P PP P PPPP P PP
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 1008 LXXPPPPAXXXXXPPXAPPP 1067
L PPPP+ PP PPP
Sbjct: 45 LTIPPPPSVDHSAPPSGPPP 64
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 807 PPXPPPPPPXXPXXG 851
PP PPPPPP G
Sbjct: 945 PPPPPPPPPLVSAAG 959
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 807 PPXPPPPPP 833
PP PPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 807 PPXPPPPPP 833
PP PPPPPP
Sbjct: 189 PPPPPPPPP 197
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 978 PPXPPXXXPFLXXPPPPAXXXXXPPXAPPPRPT 1076
PP PP P PP A PP PP T
Sbjct: 1883 PPPPPMALP-KAGPPSAAPTSALPPAGPPAGAT 1914
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,604
Number of Sequences: 5004
Number of extensions: 29339
Number of successful extensions: 386
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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