Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P04
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0206 + 41990251-41992032,41992131-41992361                       34   0.13 
02_02_0317 + 8893593-8894207                                           30   2.1  
03_05_0439 + 24319464-24320102                                         30   2.8  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.5  
04_04_1179 - 31512592-31515126                                         28   8.5  
04_03_0670 - 18544745-18545119,18545319-18545551,18546377-185464...    28   8.5  
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105...    28   8.5  

>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
 Frame = +1

Query: 145 YWEDEEGYPVSGQFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREIF 309
           Y  D EG P+    S+R  R   W++Q+GG      +++G     D  L     +NR+  
Sbjct: 216 YQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQYV 273

Query: 310 NDDRGKLTGQA-YGTXVLGPAGGQYKLRWTSRL 405
           N D+  L+ QA   T  L    GQ+K  W  R+
Sbjct: 274 NMDKTWLSKQAEMSTLQL----GQWKPSWRHRI 302


>02_02_0317 + 8893593-8894207
          Length = 204

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = +2

Query: 341 PTAPXSW--DPQGDSTNYGG-------RLDWANKNAEAAIDINRQIGGRSGMTATGSGVW 493
           P +P SW  DP G++    G       R D A+    A      + GG   + A G G W
Sbjct: 94  PHSPTSWRLDPVGEAGEESGSRWGRRWRPDPASDGRGAGEAWEVEAGGGREVEAAGGGTW 153

Query: 494 DLDKNTR-LSAGG 529
           ++ +N R + AGG
Sbjct: 154 EVRRNKREVEAGG 166


>03_05_0439 + 24319464-24320102
          Length = 212

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +2

Query: 347 APXSWDPQGDSTNYGGRLDWANKNAEAAIDINRQIGGRSGMTATGSGVWDL 499
           AP +W P G     GGR  W    A AA  +    GG +G    G  +W L
Sbjct: 56  APSAWSPGG-----GGRRQWRAAGAAAAKWLPFVAGGAAGRYPYGRPLWGL 101


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 377  STNYGGRLDWANKNAEAAIDINRQI 451
            S+ +GG L W N + E+ +D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


>04_04_1179 - 31512592-31515126
          Length = 844

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 180 TANWISFFVLPINFCVDTH 124
           TA+W +F VLP N+C+  H
Sbjct: 86  TASWYNFSVLPGNYCLRLH 104


>04_03_0670 -
           18544745-18545119,18545319-18545551,18546377-18546476,
           18546842-18546910,18547822-18547900,18547989-18548224
          Length = 363

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 296 TERSSMMTAAN*PGRPTAPXSWDPQGDSTNYGGRLD 403
           T R   +T A    RP A  S   QG++T  GGR+D
Sbjct: 313 TARGPDLTTAAPETRPRAAPSHGLQGEATESGGRMD 348


>02_01_0148 -
           1051121-1051192,1051378-1051512,1052343-1052396,
           1052501-1052581,1052667-1052826,1053346-1053453,
           1053543-1053718,1053952-1054002,1054154-1054264,
           1054493-1054547,1055667-1055789,1055922-1056007,
           1056235-1056349,1056429-1056667
          Length = 521

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 177 ANWISFFVLPINFCVDTHQDRGEEI 103
           A W  F  LP  + +D H DR E++
Sbjct: 69  ALWAHFHRLPARYALDVHADRAEDV 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,327,485
Number of Sequences: 37544
Number of extensions: 470761
Number of successful extensions: 1242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)