Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P03
         (954 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY950677-1|AAY34145.1|  520|Homo sapiens MEX3A protein.                31   4.7  
AF115392-1|AAD23438.1|  346|Homo sapiens retinal homeobox protei...    26   8.1  

>AY950677-1|AAY34145.1|  520|Homo sapiens MEX3A protein.
          Length = 520

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 789 GGGGGGXXXXXXXXPPXPXPPP 854
           GGGGGG        PP P PPP
Sbjct: 62  GGGGGGGAPAQPAAPPQPAPPP 83


>AF115392-1|AAD23438.1|  346|Homo sapiens retinal homeobox protein
           RX protein.
          Length = 346

 Score = 26.2 bits (55), Expect(2) = 8.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 807 PPPPPPPF 784
           PPPPPPPF
Sbjct: 276 PPPPPPPF 283



 Score = 23.0 bits (47), Expect(2) = 8.1
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = -1

Query: 897 PXXXGGXKXKKKXXXGGGXXGGXXXXXXXXPPPPPP 790
           P   GG     +   G G            PPPPPP
Sbjct: 247 PPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPP 282


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,931,013
Number of Sequences: 237096
Number of extensions: 2381429
Number of successful extensions: 19977
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11681
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)