Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_O23
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    85   5e-17
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   3.7  
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694...    28   8.6  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 47/111 (42%), Positives = 60/111 (54%)
 Frame = +3

Query: 126 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 305
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 306 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 458
           ++GSG                                   SDDDMGF LFD
Sbjct: 61  SVGSG-GGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 90  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 212
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>03_05_0882 +
           28467691-28467730,28468386-28468675,28469262-28469411,
           28470126-28470214,28470331-28470440,28470545-28470639,
           28471110-28471162,28471374-28471539,28471909-28472001,
           28472304-28472432,28472549-28472668,28472862-28472942,
           28473495-28473602,28473895-28474038,28474120-28474218,
           28474300-28474379,28474830-28474922,28475197-28475320
          Length = 687

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
 Frame = +3

Query: 15  THYREFLKICSLLSELKRACSLLS*GLRQLARSKL--KMVSKAEL--ACVYSALILVDDD 182
           TH  E  K+ +LLSE + A + L   L++    +L   +  K ++  A  Y+++   D +
Sbjct: 316 THVNELKKLTALLSEKENALTELKKELQERPTRRLVDDLKKKVQILQAVGYNSIEAEDWE 375

Query: 183 VAVTGEKISTILKAAAVD 236
           +A  GE++S  L+A  +D
Sbjct: 376 LATNGEEMSK-LEALLLD 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,494
Number of Sequences: 37544
Number of extensions: 255793
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)