Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_O22
         (1013 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 18/60 (30%), Positives = 19/60 (31%)
 Frame = +1

Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
           PP P   L P    PP    P  SP   P         P   P P  P+ P       PS
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189



 Score = 29.5 bits (63), Expect = 0.79
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
 Frame = +1

Query: 817  PPXPSRA--LXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHX 990
            PP PS+A  +  S P P     P+ SP   P         P   P P     P       
Sbjct: 158  PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217

Query: 991  PSPXXP 1008
            PS   P
Sbjct: 218  PSSFAP 223



 Score = 23.4 bits (48), Expect(2) = 9.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 534 PSXPSXXXXXPPPXPRXTPP 593
           PS PS     PP  P+  PP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPP 204



 Score = 20.6 bits (41), Expect(2) = 9.8
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +3

Query: 588 PPXHXXPXXTXXTPXPPNIFXXXPXXXXPP 677
           PP    P  T  +P  PN     P    PP
Sbjct: 223 PPAGHAPNVTSESPKFPNRGPSIPSASVPP 252


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/48 (27%), Positives = 15/48 (31%)
 Frame = +3

Query: 534 PSXPSXXXXXPPPXPRXTPPXHXXPXXTXXTPXPPNIFXXXPXXXXPP 677
           P  P+     P P P   PP           P PP +    P    PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/52 (26%), Positives = 17/52 (32%)
 Frame = +1

Query: 853  PXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSPXXP 1008
            P PP     + +P P P   P         P P  P G +      P P  P
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = +1

Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
           P P+ A  P  P  P    P   P P P      G  P   P P   +G S    + P+P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGP--PPPPPPPGVAGAGPPPPPPPPPAVSAGGS--RYYAPAP 797



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
 Frame = +1

Query: 832 RALXPSXPXPPXXXX---PLXSPXPXPXEXPXYGXXPXXXPHP 951
           + L  S P PP       P  +P P P   P  G  P   P P
Sbjct: 726 KLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = +1

Query: 817  PPXPSRALXPSXPXPPXXXXPLXSP-XPXPXEXPXYGXXPXXXPHPRXPSGPS 972
            PP P  +  P  P P     P+  P    P   P  G  P   P  + P  P+
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +1

Query: 826  PSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPS 972
            P +   P+ P PP    P  S  P P   P     P   P    PS P+
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP--SAPPPPLPASSAPSVPN 1745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,931
Number of Sequences: 5004
Number of extensions: 10146
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)