BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_O22
(1013 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 39 0.005
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 39 0.005
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.43
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 2.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.3
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 30 3.0
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 3.0
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 3.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 3.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 3.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 3.0
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 29 4.0
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 29 4.0
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 29 4.0
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 29 5.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.3
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 7.0
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 7.0
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 39.1 bits (87), Expect = 0.005
Identities = 31/122 (25%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Frame = +1
Query: 673 PPNXXXXXPPXXXXPXPXARTXPXX----FPPXAXXXXXXXXXXXXXXXXXXPPXPSRAL 840
PP+ PP P R P +PP PP PSR
Sbjct: 267 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 326
Query: 841 XPSX-----PXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSPXX 1005
P P PP P P P P P G P P P P + P P
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
Query: 1006 PT 1011
P+
Sbjct: 387 PS 388
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +3
Query: 564 PPPXPRXT---PPXHXXPXXTXXTPXPPNIFXXXPXXXXPPKRXXXLP 698
PPP P T PP P T P PP+ P PP R P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 311
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 39.1 bits (87), Expect = 0.005
Identities = 31/122 (25%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Frame = +1
Query: 673 PPNXXXXXPPXXXXPXPXARTXPXX----FPPXAXXXXXXXXXXXXXXXXXXPPXPSRAL 840
PP+ PP P R P +PP PP PSR
Sbjct: 277 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 336
Query: 841 XPSX-----PXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSPXX 1005
P P PP P P P P P G P P P P + P P
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
Query: 1006 PT 1011
P+
Sbjct: 397 PS 398
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +3
Query: 564 PPPXPRXT---PPXHXXPXXTXXTPXPPNIFXXXPXXXXPPKRXXXLP 698
PPP P T PP P T P PP+ P PP R P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 321
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 32.7 bits (71), Expect = 0.43
Identities = 24/68 (35%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSP--XPXPXEXPXYGXXPXXXPHPRXPSGPS--TLXX 984
PP SRA S P PP P P P P P P P PR P P
Sbjct: 127 PPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRP-PRTPPSPEPRNPPR 185
Query: 985 HXPSPXXP 1008
PSP P
Sbjct: 186 TPPSPIPP 193
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
P PS PS P P P P P G P P P PS P+ + P+P
Sbjct: 977 PGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSP-NGPSPNGPS-PNGPSPNGPTP 1034
Query: 1000 XXPT 1011
P+
Sbjct: 1035 NWPS 1038
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
P P+ P+ P P PL P P P G P P P+GPS + P
Sbjct: 1254 PNGPNEPSDPNRPGPNGPNGPLDPNKPGP-NGPN-GPSDPNKPGPNGPNGPS--DPNKPG 1309
Query: 997 PXXP 1008
P P
Sbjct: 1310 PNGP 1313
Score = 29.1 bits (62), Expect = 5.3
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Frame = +1
Query: 817 PPXPSRALXPSXPXP--PXXXXPLXSPXPX-PXEXPXYGXXPXXXPHPRXPSGPSTLXXH 987
PP P+ P+ P P P P P P G P P PS P
Sbjct: 946 PPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKPSPS 1005
Query: 988 XPSPXXPT 1011
PSP P+
Sbjct: 1006 GPSPNGPS 1013
Score = 28.7 bits (61), Expect = 7.0
Identities = 18/64 (28%), Positives = 22/64 (34%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
P P+ P P P P P G P P P+GPS + PSP
Sbjct: 936 PKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPS--DPNKPSP 993
Query: 1000 XXPT 1011
P+
Sbjct: 994 NGPS 997
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 844 PSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPST 975
P P PP +P P P P G P P P GP++
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMGPAS 604
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGP 969
PP P P+ P P P P P P P P PHP P
Sbjct: 97 PPPPP---PPTQPEPEPEPRPEPQPEPQPEPQPEPQPEPQPEPHPEPAPEP 144
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXX-PLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXP 993
PP P PS P PL + P P E P + P P P+GP+ P
Sbjct: 511 PPGP---FDPSGAPPSGMPPVPLPTDLPIPSESPSFFQWIFGRPKPSGPAGPAP-SGEPP 566
Query: 994 SPXXPT 1011
P P+
Sbjct: 567 GPFDPS 572
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical protein
C50F7.5 protein.
Length = 309
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
P PS PS P P P P P P P P R P P P
Sbjct: 214 PVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGP---PGPPGPPTRRPPGPPGPPTRRPPG 270
Query: 997 PXXP 1008
P P
Sbjct: 271 PPGP 274
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 525 GNCPSXPSXXXXXPPPXPRXTPPXHXXPXXTXXTPXPP 638
G P P PPP PR +PP P PP
Sbjct: 286 GGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 525 GNCPSXPSXXXXXPPPXPRXTPPXHXXPXXTXXTPXPP 638
G P P PPP PR +PP P PP
Sbjct: 307 GGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 525 GNCPSXPSXXXXXPPPXPRXTPPXHXXPXXTXXTPXPP 638
G P P PPP PR +PP P PP
Sbjct: 292 GGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
P P+ P P PP P+ P P + P PHP + + + P+P
Sbjct: 89 PLPTPVKTPPLPRPPGNLNPVQQP-QIPVQRTPPQCPPPPVPHPPQITQMAPILPTSPAP 147
Query: 1000 XXP 1008
P
Sbjct: 148 PPP 150
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPL-XSPXPXPXEXPXYGXXPXXXPHP 951
P PS P+ P PP P +P P P P P P P
Sbjct: 538 PEPSPVREPTPPPPPREPTPREPTPEPEPVREPTPPPPPPAKPRP 582
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
P P P P P P P P P P P P P+ P T P P
Sbjct: 207 PKPEPKPKPK-PEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEPKP 265
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +1
Query: 820 PXPSRALXPSX-PXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
P P L P P P P+ P P P P P P+ S P+ P
Sbjct: 263 PKPKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPKPKPRPK 322
Query: 997 P 999
P
Sbjct: 323 P 323
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/64 (26%), Positives = 20/64 (31%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
P P+ P P P P P P P P P P+P+ P P P
Sbjct: 195 PKPNPKPEPK-PKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEP 253
Query: 1000 XXPT 1011
T
Sbjct: 254 KPKT 257
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +1
Query: 847 SXPXPPXXXXPLXSPXPX--PXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
S P P P P P P P P P P+ P + H P P
Sbjct: 6 SKPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKP 58
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
P P P P P P+ P P P P P P P+ P + H P P
Sbjct: 68 PMPKHKPKP-FPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPK----PKPMPKHKPKP 122
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 820 PXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPSP 999
P P P P P P+ P P P P P P P S P + P P
Sbjct: 114 PMPKHKPKP-FPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMP 172
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
PP P L P PP P P P P P P P P P P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Query: 997 PXXP 1008
P P
Sbjct: 787 PPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
PP P L P PP P P P P P P P P P P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Query: 997 PXXP 1008
P P
Sbjct: 787 PPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
PP P L P PP P P P P P P P P P P
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
Query: 997 PXXP 1008
P P
Sbjct: 370 PPPP 373
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.7 bits (61), Expect = 7.0
Identities = 23/103 (22%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Frame = +1
Query: 673 PPNXXXXXPPXXXXPXPXARTXPXXFPPXAXXXXXXXXXXXXXXXXXXP-PXPSRALXPS 849
PP PP P P P PP P P P A P+
Sbjct: 177 PPTTKAPPPPTTKAPPPPTTKAPP--PPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPN 234
Query: 850 XPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTL 978
P P + + P P P P P P +T+
Sbjct: 235 PPAPENTTAKVETTKPTKAAPPAPTPVPNPVPSPPPPPANTTV 277
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXP 993
PP P P P PP P P P P P P P P P + + P
Sbjct: 32 PPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPP----PPPPPPPMCPPPPPPMPSYSP 86
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
PP PSR PS P SP P P P P P P P L
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSK--SPPPPPPLPPIATPSSVPPPPPPPPPPPPALEQEISG 531
Query: 997 P 999
P
Sbjct: 532 P 532
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 9.2
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = +1
Query: 817 PPXPSRALXPSXPXPPXXXXPLXSPXPXPXEXPXYGXXPXXXPHPRXPSGPSTLXXHXPS 996
PP PS L P P PP P S P P P P P P L
Sbjct: 1345 PPPPSDDLTPVPPPPP--PPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPPLPSEEKK 1402
Query: 997 PXXPT 1011
PT
Sbjct: 1403 NPLPT 1407
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,554,393
Number of Sequences: 27780
Number of extensions: 97298
Number of successful extensions: 795
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2667870690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -