Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_O21
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1386 - 26192019-26192073,26192272-26192397,26192570-261926...    30   2.7  
04_01_0555 + 7152196-7153065,7154805-7154960,7155058-7155130,715...    29   4.7  
08_02_1374 + 26519720-26519989,26520679-26520737,26520810-265209...    29   6.3  
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    28   8.3  

>07_03_1386 -
           26192019-26192073,26192272-26192397,26192570-26192622,
           26192722-26192807,26192896-26193017,26193096-26193155,
           26193787-26193866,26193949-26194087,26194273-26194367,
           26194792-26194860,26195015-26195131,26195839-26195913,
           26196590-26196961
          Length = 482

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 324 NNLLKYRHPCIVRYISAWQQRSTLHLATEYV 416
           N L+K RHP IV+++ A  +   L L TE++
Sbjct: 257 NLLIKLRHPNIVQFLGAVTETKPLMLVTEFL 287


>04_01_0555 +
           7152196-7153065,7154805-7154960,7155058-7155130,
           7156261-7156367
          Length = 401

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 309 LEKFCNNLLKYRHPCIVRYISAWQQRSTLHLATEYVLPLSHVLKTLSPLQICI 467
           L  F NNLL++    ++ +   + +R  LHLA  +  P     K    ++ CI
Sbjct: 69  LMDFANNLLEFGDVHVIDFNPPFLERFRLHLAHSWTAPYIRAWKGSRLIECCI 121


>08_02_1374 +
           26519720-26519989,26520679-26520737,26520810-26520924,
           26521092-26521136,26521424-26521477
          Length = 180

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -2

Query: 507 MPRILKL*ECCLIQCKFVKVKEFSEHDLEVAHIL-LPNAVSNAVAML 370
           +P+I  + +CCLI    + V E + ++L +A +  L  A++NA+ ++
Sbjct: 101 VPKINHITQCCLIVQVIISVLESNVNELNIAELRGLEEAMTNALTVV 147


>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
 Frame = +3

Query: 327 NLLK-YRHPCIVRYISAWQQRSTLHLATEYVL--PLSHVLK--TLSPLQ---ICIGLNNI 482
           +LLK   H  IV+Y+ + + RS LH+  EYV    L++++K     P     + + +  +
Sbjct: 84  DLLKNLNHKNIVKYLGSLKTRSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQV 143

Query: 483 LRALVFL 503
           L  LV+L
Sbjct: 144 LEGLVYL 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,797,160
Number of Sequences: 37544
Number of extensions: 379254
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)