Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_O21
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   6.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   6.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 277 AASPLKTDTEPSPFRXEVSTTIFYSGLILLPKFCYLYSFILYFQ 146
           A+SPL+    PS F   V+     + L+++ ++      +LY +
Sbjct: 692 ASSPLEPSAVPSKFCLSVTLLTVATSLVIVSRYAEKSRRMLYLR 735


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 354 IVRYISAWQQRSTLHLATEYV 416
           +VRY+S W++   L++A+ ++
Sbjct: 225 LVRYVSQWEEVYFLNMASVFM 245


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 331 Y*NIDIHVL*DTYQHGNSVRHCIWQQNMC 417
           Y N+DI V+ +T +  N+  +C+  Q  C
Sbjct: 28  YDNVDIDVVLNTERLLNAYVNCLLDQGPC 56


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 331 Y*NIDIHVL*DTYQHGNSVRHCIWQQNMC 417
           Y N+DI V+ +T +  N+  +C+  Q  C
Sbjct: 28  YDNVDIDVVLNTERLLNAYVNCLLDQGPC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,643
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)