Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_O11
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    32   0.094
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   4.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   6.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   8.1  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
 Frame = +3

Query: 195 GLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTS 374
           GL  MG  +  N   KGFTV  Y+ +   ++    N      SI            +   
Sbjct: 13  GLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAK-GKSIVGAHSLEEFVSKLKKP 71

Query: 375 NKVVLDVYLGK------DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDAP 533
              +L V  GK      +G+    +KG +++D      P+  ++   +A +KG+ F  + 
Sbjct: 72  RVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGSG 130

Query: 534 VSGGVMGAQ 560
           VSGG  GA+
Sbjct: 131 VSGGEEGAR 139


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 14  THYREFLRFELLCARAHGRTLN*EK 88
           T Y + LRFELL   +H RTL  EK
Sbjct: 384 TSYSD-LRFELLYTESHSRTLRHEK 407


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 557 SERYPGLHGPEVVKKTSKGPFLSSK*WELNSSTADRSGSGQV-AKLTNNML 706
           S  YP    P     +S  P LSS+  +  +S A R  S  V +K T+N++
Sbjct: 249 SRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKSTDNII 299


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 659 PQWNCLAPITLRRGRDLSKSSLRPP 585
           PQ +C   ++L    DLSKSSL  P
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATP 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,819,254
Number of Sequences: 5004
Number of extensions: 84473
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)