Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_O09
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           38   0.011
03_06_0471 + 34169562-34169892,34170121-34170347                       33   0.41 
02_04_0382 - 22501041-22501279,22501717-22501810                       31   1.3  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.9  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   3.8  
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746...    28   8.9  
05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684...    28   8.9  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +1

Query: 136 PTLKTPXKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQG 306
           P+   P    +  +    Y P  + P  V PP  Y P  +G  P     N + Y +PP G
Sbjct: 376 PSTPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVG 434

Query: 307 RPYFKPTPFPGARG 348
           RP   P P  GA G
Sbjct: 435 RPNSGPPPSYGAGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 190 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 339
           Y P    P    PP  Y P+  GY P   GAY   PP G   +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 166 ENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGAR 345
           +N      +E     P   +PP    P+ + Y+P  +  YY DPP    Y+ P P P   
Sbjct: 36  DNPPESPDHEDPPPSPEYYDPP----PSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYG 90

Query: 346 GG 351
           GG
Sbjct: 91  GG 92


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +1

Query: 208 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 324
           +PY   P   P    P G  Y P   G  Y  PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 196 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 336
           P  + P IV  P  Y P+   YEP     Y  +PP   PY  P  FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680


>05_05_0219 +
           23371561-23371680,23371799-23372207,23374520-23374635,
           23375385-23375855
          Length = 371

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
 Frame = +1

Query: 136 PTLKTPXKVVENADSGNGYEPIDNR-----PYIVNPPKDYNP---------NGNGYEPID 273
           PT+       E+A S NG  P+        P    PPKD  P          G   +  +
Sbjct: 45  PTVAAGGSHKESAKSSNGQNPVTKETHHQTPPPAKPPKDQTPPPPPAVSESKGQKGDAGN 104

Query: 274 NGAYYVDPPQGRPYFKPTPFPGARGGK 354
           N  + V P        P   PG  GGK
Sbjct: 105 NSGHPVPPTDAHKTSPPPEGPGPTGGK 131


>05_05_0153 -
           22766805-22767023,22767662-22767940,22768294-22768401,
           22768500-22768779,22768871-22769174,22769367-22769975,
           22770186-22770411
          Length = 674

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 107 HEEFHFYMITSYHRRKY*SCQNLKEFPIV 21
           HEE+  + +  +HR+     +  KEFPIV
Sbjct: 364 HEEYEVFELRIFHRKNRTGFEENKEFPIV 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,468
Number of Sequences: 37544
Number of extensions: 278455
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)