Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_O02
(947 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.015
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.034
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.034
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.18
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.24
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.015
Identities = 34/120 (28%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Frame = +3
Query: 597 PPPXPPXS-LXXXXPXPPXXSXXPPXXXXXVXPLEXLTPPXPSXRLPXRXRXXAXPLXPX 773
PPP PP S P PP PP P PP S R + P P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS-----SSRAVSNPPAPP 392
Query: 774 XARSVXPXRSSPXVXXXXXLXXSXXXRXP-XXSAPXXSPP--PPXVXXVXPRXSXXPPPL 944
A P RS+P + + P S P +PP PP P + PPL
Sbjct: 393 PA---IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449
Score = 31.9 bits (69), Expect = 0.14
Identities = 32/115 (27%), Positives = 36/115 (31%), Gaps = 8/115 (6%)
Frame = +2
Query: 620 PPXLRSXXPPPFLXPPXXXXXXXPP*XSHPPXPFXPSPXSXXPXRXPSXSPXRALGXXXA 799
PP RS PPP PP S P+P P R P +
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 800 FFPXRXPXXLPPXLX-----RASXSXXLGAXXLPP-PPXR--LSXXPXXLXXAPP 940
P P LPP A S +GA PP PP P + APP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +1
Query: 643 PPXXPXPPXXRXXXSXPLXXSP-PPPLXAVSXXAXAXPP 756
PP P P R P +P PPP+ S + PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.034
Identities = 20/48 (41%), Positives = 20/48 (41%)
Frame = -3
Query: 489 GXXGRGEGGXXXGEEXGGXAGGXGGRGXRXGXGGGGXVXXGXXXXGXG 346
G G G GG G GG GG GG G G GGG G G G
Sbjct: 224 GGFGGGPGGFEGGP--GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 33.1 bits (72), Expect = 0.059
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -3
Query: 489 GXXGRGEGGXXXGEEXGGXAGGXGGRGXRXGXGGGGXVXXGXXXXGXGXGXG 334
G G G GG G G GG GG G G GG G G G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/47 (40%), Positives = 19/47 (40%)
Frame = -3
Query: 474 GEGGXXXGEEXGGXAGGXGGRGXRXGXGGGGXVXXGXXXXGXGXGXG 334
GEG G GG GG GG G GGG G G G G G
Sbjct: 215 GEGHHHGGH--GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.9 bits (74), Expect = 0.034
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = -3
Query: 489 GXXGRGEGGXXXGEEXGGXAGGXGGRGXRXGXGGGGXVXXGXXXXG 352
G G G GG G GG GG GGRG G GG G G
Sbjct: 26 GGFGGGRGGARGGGR-GGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 30.3 bits (65), Expect = 0.41
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 480 GRGEGGXXXGEEXGGXAGGXGGRGXRXGXGGGGXVXXGXXXXGXGXGXG 334
GRG G GG G GGRG G G GG G G G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 29.5 bits (63), Expect = 0.72
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -3
Query: 489 GXXGRGEGGXXXGEEX-GGXAGGXGGR-GXRXGXGGGGXV 376
G G G GG G GG GG GG G R G GG V
Sbjct: 34 GARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKV 73
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = -3
Query: 489 GXXGRGEGGXXXGEEXGGXAGGXGG-RGXRXGXGGGGXVXXGXXXXGXGXGXG 334
G G GG G G GG GG RG R G GG G G G G
Sbjct: 19 GGFNGGRGGFGGGR-GGARGGGRGGARGGRGGRGGARG-GRGGSSGGRGGAKG 69
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.5 bits (68), Expect = 0.18
Identities = 20/50 (40%), Positives = 20/50 (40%)
Frame = -3
Query: 489 GXXGRGEGGXXXGEEXGGXAGGXGGRGXRXGXGGGGXVXXGXXXXGXGXG 340
G GRG G G GG GG GG R G GGG G G G
Sbjct: 133 GPAGRGGRGGFRGGR-GGSRGGFGGNS-RGGFGGGSRGGFGGGSRGGSRG 180
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.24
Identities = 22/70 (31%), Positives = 25/70 (35%)
Frame = +3
Query: 579 APXPXXPPPXPPXSLXXXXPXPPXXSXXPPXXXXXVXPLEXLTPPXPSXRLPXRXRXXAX 758
AP PP P L PP S PP P+ PP PS LP + A
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPAS-APPIPSKAPPIPS-SLPPPAQPAAP 180
Query: 759 PLXPXXARSV 788
P A S+
Sbjct: 181 VKSPPSAPSL 190
Score = 30.7 bits (66), Expect = 0.31
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +2
Query: 587 PXXXPSXPSA*PPXLRSXXPPPFLXPPXXXXXXXPP*XSHPPXPFXPSPXSXXPXRXPSX 766
P PS PSA PP PPP P P + PP P+ S P + P+
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFA-PPAGHAPNVTSESP-KFPNR 241
Query: 767 SP 772
P
Sbjct: 242 GP 243
Score = 27.1 bits (57), Expect = 3.9
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Frame = +1
Query: 643 PPXXPXPPXX----RXXXSXPLXXSPPPPLXAVSXXAXAXPPPL--XXPXPRARSXXXVL 804
PP P PP R S P S PPP A + + PP+ P P +
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 805 PRSXPXRXXSXXP 843
P S P + P
Sbjct: 184 PPSAPSLPSAVPP 196
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +2
Query: 599 PSXPSA*PPXLRSXXPPPFLXPPXXXXXXXPP*XSHPPXPFXPSPXSXXPXRXPSXSP 772
P+ P + PP PP + P PP S PP P P + P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPP----PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/48 (27%), Positives = 16/48 (33%)
Frame = +3
Query: 576 VAPXPXXPPPXPPXSLXXXXPXPPXXSXXPPXXXXXVXPLEXLTPPXP 719
V+ P P P + P PP S PP + PP P
Sbjct: 1687 VSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 24.6 bits (51), Expect(2) = 1.3
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +1
Query: 352 PXPXXPXXHSPPPPXPXPXP 411
P P P PPPP P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724
Score = 22.2 bits (45), Expect(2) = 1.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +1
Query: 487 PPXSXXSPAXPXXSPXPXXP 546
PP + PA P +P P P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLP 1736
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +1
Query: 643 PPXXPXPPXXRXXXSXPLXXSPPPPLXAVSXXAXAXPPPLXXPXPR 780
PP P PP P PPPP + P P P P+
Sbjct: 761 PPPPPPPPGVAGAGPPP--PPPPPPAVSAGGSRYYAPAPQAEPEPK 804
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 322 PXXXXXPXPXPXPXXPXXHSPPPPXPXP 405
P P P P P PPPP P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 858 PXXSAPXXSPPPPXVXXVXPRXSXXPPP 941
P P PPPP V P PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 346 PXPXPXXPXXHSPPPPXPXPXPP 414
P P P P PP P P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 655 PXPPXXRXXXSXPLXXSPPPPLXAVSXXAXAXPPPLXXPXP 777
P P P+ PPPP A A PPP P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.2
Identities = 27/121 (22%), Positives = 38/121 (31%)
Frame = +3
Query: 582 PXPXXPPPXPPXSLXXXXPXPPXXSXXPPXXXXXVXPLEXLTPPXPSXRLPXRXRXXAXP 761
P P PP P S P P + P V P+ P PS P A P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPV-----PAPSGAPPVPKPSVAAP 1131
Query: 762 LXPXXARSVXPXRSSPXVXXXXXLXXSXXXRXPXXSAPXXSPPPPXVXXVXPRXSXXPPP 941
P + + + S + P +AP P + V P+ + PP
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVPP 1190
Query: 942 L 944
+
Sbjct: 1191 V 1191
Score = 26.6 bits (56), Expect = 5.1
Identities = 30/128 (23%), Positives = 35/128 (27%), Gaps = 1/128 (0%)
Frame = +2
Query: 560 PXXXXGXAXPXXXPSXPSA*PPXLRSXXPPPFLXPPXXXXXXXPP*XSHP-PXPFXPSPX 736
P A P PS + PP PP P P + P P P +P
Sbjct: 1113 PVPAPSGAPPVPKPSVAA--PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Query: 737 SXXPXRXPSXSPXRALGXXXAFFPXRXPXXLPPXLXRASXSXXLGAXXLPPPPXRLSXXP 916
P P A G P P P + A +P P L P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Query: 917 XXLXXAPP 940
APP
Sbjct: 1231 VPTAKAPP 1238
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/65 (23%), Positives = 18/65 (27%)
Frame = +1
Query: 352 PXPXXPXXHSPPPPXPXPXPPXXXXXXXXXXXXXXXXXXXXXXXXPPXSXXSPAXPXXSP 531
P P ++PPPP P P PP A P +P
Sbjct: 179 PATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAP 238
Query: 532 XPXXP 546
P P
Sbjct: 239 PPPPP 243
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 340 PXPXPXPXXPXXHSPPPPXPXPXPP 414
P P P P PP P P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +1
Query: 322 PXXXXXPXPXPXPXXPXXHSPPPPXP 399
P P P P P PPPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 643 PPXXPXPPXXRXXXSXPLXXSPPPP 717
PP P PP P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,704
Number of Sequences: 5004
Number of extensions: 25129
Number of successful extensions: 246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -