Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_O02
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 340 PXPXPXPXXPXXHSPPPPXPXPXP 411
           P P   P  P   SPP P   P P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 474 GEGGXXXGEEXGGXAGGXGGRGXRXGXGGGG 382
           G G    G    G +GG    G   G GGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 379 SPPPPXPXPXPP 414
           +PP P P P PP
Sbjct: 337 TPPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,276
Number of Sequences: 438
Number of extensions: 5172
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)