Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_N23
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.70 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 776 PXPPPPPXXPXXRPPRXPPPXAGXPXPPPXXP 871
           P P P P      P R  PP      PPP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPS-QGPPPGGP 51



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 775 PPPPPXPXXPXXXAPPXPPXXGGXXXPXPXXPPXPP 882
           P P   P  P   +PP P        P P  PP  P
Sbjct: 25  PSPHQSPQAPQRGSPPNP-----SQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/30 (30%), Positives = 10/30 (33%)
 Frame = +2

Query: 782 PPPPPXXPXXRPPRXPPPXAGXPXPPPXXP 871
           P  P       P + PPP      PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 830 GGXGGAXXXGXXGXGGGGGXXXXXG 756
           G  GG+   G    GGGGG     G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 169 HHRSLGQSDAGEENYELGGHDVL 101
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 833  PXAGXPXPPPXXP 871
            P +G P PPP  P
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,580
Number of Sequences: 438
Number of extensions: 5756
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)