Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_N21
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   108   6e-24
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   0.86 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   3.5  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   3.5  
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score =  108 bits (259), Expect = 6e-24
 Identities = 59/123 (47%), Positives = 73/123 (59%)
 Frame = +3

Query: 90  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 269
           M K+KC  LR +                  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 270 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 449
            +Q  K  LR  Y + KYKP+DLR KKTRA+R+ LT HE  +++ K+  K      R +A
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFA 120

Query: 450 VKA 458
           VKA
Sbjct: 121 VKA 123


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 769 NGIRPPPRGKSPXXVXGPL-FPXSXLPEPXWXPGPSGLGXTXFPPP 903
           +G+ PPP    P    GP   P    P P    GP G+G    PPP
Sbjct: 293 SGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +1

Query: 781 PPPRGKSPXXVXGP---LFPXSXLPEPXWXPGPSGLGXTXFPPP 903
           PP  G +P     P   ++P    P P   PGP G+     PPP
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 769 NGIRPPPRGKSPXXVXGPL-FPXSXLPEPXWXPGPSGLGXTXFPPP 903
           +G+ PPP    P    GP   P    P P    GP G+G    PPP
Sbjct: 303 SGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +1

Query: 781 PPPRGKSPXXVXGP---LFPXSXLPEPXWXPGPSGLGXTXFPPP 903
           PP  G +P     P   ++P    P P   PGP G+     PPP
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/68 (32%), Positives = 24/68 (35%)
 Frame = +1

Query: 700 PMAFHFXVSRVXGGXCGEVFSCINGIRPPPRGKSPXXVXGPLFPXSXLPEPXWXPGPSGL 879
           P  FH    +  GG    V S      PPP+   P     P  P S    P    GP G 
Sbjct: 353 PQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQ-SGPPGAFAP--PPSAFGAPQGPGGPGGY 409

Query: 880 GXTXFPPP 903
           G    PPP
Sbjct: 410 GP---PPP 414


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 309 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 422
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 309 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 422
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 309 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 422
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +1

Query: 781 PPPRGKSPXXVXGPLFPXSXLPEPXWXPGPSGLGXTXFPP 900
           P P G SP    G   P    P P   PGP G   T  PP
Sbjct: 237 PGPDGASPTAAPGAAGPPGP-PGPAGAPGPDGNPGTAGPP 275


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +1

Query: 781 PPPRGKSPXXVXGPLFPXSXLPEPXWXPGPSGLGXTXFPP 900
           P P G SP    G   P    P P   PGP G   T  PP
Sbjct: 236 PGPDGASPTAAPGAAGPPGP-PGPAGAPGPDGNPGTAGPP 274


>Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
           protein T04F8.8 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +1

Query: 682 NQFNNQPMAFHFXVSRVXGGXCGEVFSCINGIRPPPRGKSPXXVXGPLFPXSXLPEPXWX 861
           N +NN P  F    +R  GG  G  +    G  PPP          P       PEP   
Sbjct: 64  NNYNNGPPPFDGGYNRPYGGGGGGGYGRPQGYVPPPPPPPTQPEPEPEPRPEPQPEPQPE 123

Query: 862 PGP 870
           P P
Sbjct: 124 PQP 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,038,862
Number of Sequences: 27780
Number of extensions: 323067
Number of successful extensions: 902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)