Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_N13
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0144 - 1705429-1706250 32 0.66
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325 31 1.5
01_01_1008 - 7987936-7988628,7988923-7989102 31 1.5
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 29 3.5
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 29 4.7
03_05_0583 - 25838016-25838684 29 4.7
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 29 6.2
01_06_0005 - 25514039-25514137,25514508-25514570,25514937-255150... 29 6.2
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.1
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 8.1
>10_01_0144 - 1705429-1706250
Length = 273
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 780 SPGWXERXHRXGIXTA*GMRKRHASRREKGGQVSGKRQGS 661
+PGW R G+ A G R+R RR+ GG G + +
Sbjct: 193 APGWWGRGGGDGMEVAMGWRRRRRQRRDGGGNDDGTAEAA 232
>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
Length = 321
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -2
Query: 820 KGAAVGLNGGLGTQPRXEXTTTPXWDTXSVRYEEAPRFPKGERRTGIR*AAGFGTGERTR 641
K A L GG T P T P W T +R R P+ ++ AAG G G R
Sbjct: 32 KPAPRPLFGGADTTPHGSSVTEP-W-TPPMRSTAKSRRPRQQQE-----AAGGGGGGAGR 84
Query: 640 ELPGG-NAWYLYS 605
+ PGG + W LY+
Sbjct: 85 KTPGGSHDWALYT 97
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 723 RKRHASRREKGGQVSGKRQGSEQESARGSFQGETPG 616
R R RR GG+V+G+ + RG+++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 520 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRTL--PLTGYLSA 693
CWR + T D Q + +KD P + PSC L+F L PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 694 F 696
F
Sbjct: 343 F 343
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Frame = +2
Query: 563 QKSTLKSEVAKPDRTIKIPGV-SPWKLPRALSCSEPCRLPDTCPPFSLREAWRFLIPHAV 739
Q L+ V P RT+ G + + P L+C PC L CP +L + P
Sbjct: 158 QNINLQDAVNFPSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNKTTGICDPKGS 217
Query: 740 XIPXRCXRSLXPGLCAQPPVQPD 808
+C G C V D
Sbjct: 218 TSQTKCFHK---GSCKPNSVNQD 237
>03_05_0583 - 25838016-25838684
Length = 222
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 629 PWKLPRALSCSEPCRLPDTCPPFSLREAWRFLIPHAV 739
P +L CS PCR TC P E ++ L P V
Sbjct: 161 PGELRAKAGCSNPCRGNSTCGPTKDTEFFKKLCPETV 197
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 28.7 bits (61), Expect = 6.2
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = -3
Query: 807 SG*TGGWAHSPGWXERXHRXGIXTA*GMRKRHASRREKGGQVSGKRQGSEQESARGSFQG 628
+G GGW H+ R HR A +R+R R + + G R G + + G
Sbjct: 124 AGAGGGWRHAGAGGRRRHRRARRGAVRLRRRRQQWRRRRTRSCG-RTGWHNATV-ATVIG 181
Query: 627 ETPGIFIVLSGFATSDLSVDF 565
+ G +LSG + DL V F
Sbjct: 182 D--GRIALLSGISAQDLFVWF 200
>01_06_0005 -
25514039-25514137,25514508-25514570,25514937-25515047,
25515843-25516103,25516293-25516338,25516504-25516904
Length = 326
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -1
Query: 722 GSATLPEGRKADRYPVSGRVRNRRAHEGASRGKRL 618
GSATLP G P R+R RR H A RG+ L
Sbjct: 15 GSATLPHGLGRASPP---RLRFRRRHRAAGRGRGL 46
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 785 HTAQXGXNDXTXLGYXQREV*GSATLPEGRKAD-RYPVSGRVRNRRAHEGASRGKRLVS 612
H Q D QRE+ AT P D R ++GR + RR + A+R +R VS
Sbjct: 16 HQDQPRIGDANGEDPEQRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,183,041
Number of Sequences: 37544
Number of extensions: 521827
Number of successful extensions: 1736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -