Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_N11
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.16
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.16
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.20
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.38
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 29 0.87
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.87
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 2.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 27 4.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 6.1
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 797 PPXXXPXPPXPPPPXXXPPXXPPXXXP 877
PP P PP PP PP PP P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Frame = +1
Query: 799 PXXXPPXXXXPPPPXPPP-XXXPPXXP 876
P PP PPPP PP PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 797 PPXXXPXPPXPPPPXXXPPXXPP 865
P P PP PP PP PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPP 1722
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 800 PXXXPXPPXPPPPXXXPPXXPPXXXP 877
P P PP PPPP PP PP P
Sbjct: 5 PPGNPPPP-PPPPGFEPPSQPPPPPP 29
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +2
Query: 797 PPXXXPXPPXPP---PPXXXPPXXPP 865
PP P PP PP PP PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.50
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 829 PPPPXPPPXXXPPXXP 876
PPPP PPP PP P
Sbjct: 9 PPPPPPPPGFEPPSQP 24
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect(2) = 0.20
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 799 PXXXPPXXXXPPPPXPPP 852
P P PPPP PPP
Sbjct: 179 PATSLPSDYNPPPPPPPP 196
Score = 24.6 bits (51), Expect(2) = 0.33
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 812 PXPPXPPPPXXXP 850
P PP PPPP P
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 24.6 bits (51), Expect(2) = 0.20
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 829 PPPPXPPPXXXPP 867
P PP PPP PP
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 24.2 bits (50), Expect(2) = 0.33
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 797 PPXXXPXPPXPPPP 838
P P PP PPPP
Sbjct: 184 PSDYNPPPPPPPPP 197
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.38
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = -2
Query: 555 SPARWPRSTPQRSS--DRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSY 382
S R P S P R S S +S P+ S +P + P P V +P + PS
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP-VKSPPSAPSLPSA 193
Query: 381 TLPLPPTRNEGPMSQ 337
P+PP P+SQ
Sbjct: 194 VPPMPPKVPPPPLSQ 208
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 29.1 bits (62), Expect = 0.87
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 528 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 370
P+ S+++ S++ L SS P +AT LYP APT P S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 876 GXXXGGXXGGXXXGGGGXGGXGXXXGG 796
G GG GG GGG GG G GG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 876 GXXXGGXXGGXXXGGGGXGGXGXXXGGQ 793
G GG GG GG GG G GG+
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGR 64
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Frame = -2
Query: 579 CRCATAR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 424
CR AT P T Q S+ R A++ + + ++P N P D +
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588
Query: 423 *VCAPTCSQPEPSY 382
VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Frame = +2
Query: 797 PPXXXPX--PPXPPPPXXXPPXXPPXXXP 877
PP P PP P P PP PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Frame = +2
Query: 797 PPXXXPX---PPXPPPPXXXPPXXPPXXXP 877
PP P PP P P PP PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -2
Query: 363 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 274
T+ P Y WLVW +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,309
Number of Sequences: 5004
Number of extensions: 66965
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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