Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_N05
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    48   1e-06
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    31   0.21 
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    30   0.48 
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   3.4  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   4.5  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   6.0  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   6.0  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 2/151 (1%)
 Frame = +1

Query: 388  EAARCLKCADAPCQKS--CPTQIDVKSFITSIANKNYYGAAKAILSDNPLGLTCGMVCPT 561
            + ARC+ C    CQ    CP    + ++   +  + +  A   +L  N      G VCP 
Sbjct: 1652 QTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFKQQWKEALTQLLLTNNFPEFTGRVCPA 1711

Query: 562  SDLCVGGCNLHATEEGAINIGGLQHFAVDIFMKMGXPQTLXPNTKPLPKGGDHKIALIGG 741
               C G C L   E   + I  ++   +D   + G    + P   P  + G  ++A+IG 
Sbjct: 1712 P--CEGACTLGIIES-PVGIKSVERAIIDKAWEEGW---IVPRP-PAERTG-RRVAIIGS 1763

Query: 742  GPXSISCACFLAXLGYKDITVYEKEKYLGGL 834
            GP  ++ A  L   G+  + +YE+    GGL
Sbjct: 1764 GPAGLAAADQLNRAGH-HVVIYERADRPGGL 1793


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 712 GDHKIALIGGGPXSISCACFLAXLGYKDITVYEKEKYLGG 831
           G++ + +IGGGP     A   A LG K I V EK   LGG
Sbjct: 44  GEYDLCVIGGGPGGYVAAIRGAQLGLKTICV-EKRGTLGG 82


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 148 KSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVPSAQTK 270
           KS   I+AKLL++     +N LKLN T+K     +  A+TK
Sbjct: 39  KSKDEIIAKLLTEGQALSKNELKLNNTIKQLKKSLSEAETK 79


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
 Frame = +1

Query: 220 NPTVKPYTNLVPSAQTKKIKQHWKRNADRKCTTCPTLNKNFDDIKHTTLSERGALREAAR 399
           N +V    N   S +T   K HWK ++D    + P+ +  F           G       
Sbjct: 129 NSSVATSLNYQSSRETGISKDHWKPDSDVSVCSFPSCSVRF-----------GLFDRRHH 177

Query: 400 CLKCADAPCQKSC----PTQIDVK 459
           C +C D  C   C    P  +DVK
Sbjct: 178 CRRCGDIFCALHCDRNIPLTMDVK 201


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 19  TIGNSLRFESLCRTASEQSTASARNKYSYTRRYFISDCKTDFFKSISNIMAKLLSKELPD 198
           +I N+LR + +C  A            +  +R F+ DC      S ++  A+LL K +  
Sbjct: 325 SIINTLRKKKVCNVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVR 384

Query: 199 IENL 210
           +EN+
Sbjct: 385 VENV 388


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 740 PPIKAILWSPPFGSGFVLGXKVWGMPIFMNMSTAKC 633
           P   A+ WSPP  SG V+G      P    ++TA C
Sbjct: 146 PGCNAVCWSPPSLSGSVVGQSPAAGP--KKLATAGC 179


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 88  RNKYSYTRRYFISDCKTDFFKSISNIMAKLLSKELPDIENLLKLNPTVK 234
           R+ Y+Y     I+   TDF   I NI  K     L D + L   N T K
Sbjct: 615 RDSYTYEELAKITGLSTDFLTGILNIFLKAKVLLLGDNDKLGDPNSTYK 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,556,247
Number of Sequences: 5004
Number of extensions: 75765
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)