Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_N04
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0119 + 11485753-11486202                                         31   1.6  
01_05_0746 + 24856362-24856710,24856799-24856986                       29   5.0  
03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676           29   6.6  
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701...    29   6.6  
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    28   8.8  

>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 67  SCGDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 195
           S G ++ WCSS   P P  A S    L     C RR    SPL
Sbjct: 67  SRGGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109


>01_05_0746 + 24856362-24856710,24856799-24856986
          Length = 178

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 124 ARSDTVPLRFAWVCIRRPPSW 186
           ARSDT P   A VC+RR P+W
Sbjct: 84  ARSDTWPC-LAGVCVRRKPAW 103


>03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676
          Length = 240

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 478 KYGGVACVFGAFNYFEIV 531
           +YGGV  +   FNYFE+V
Sbjct: 142 RYGGVRFIINGFNYFELV 159


>02_02_0123 +
           7015905-7015928,7015975-7016105,7017675-7017940,
           7018239-7018327,7018716-7018811,7018874-7018969,
           7019121-7019251,7020123-7020177,7020645-7020800,
           7021238-7021306,7021392-7021499,7022128-7022196,
           7022743-7022797,7023031-7023227
          Length = 513

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 113 CHFVPGR--IQSHCVSRGSASVGRHLGRRWGVVAASYKM 223
           C ++P R  ++S   SRG A+   HL RR   + A ++M
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 602 WHRRXVFKGSYESPPQTRRERCS--RTISK*LKAPNTHATPPYFASK 468
           WH++ +  GS +SPP+  R  C   R + +  + P   A+P +   K
Sbjct: 466 WHKKDIQLGSTDSPPRILRSLCHALRNMDEEPRDPPEDASPRHQPEK 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,252,929
Number of Sequences: 37544
Number of extensions: 404547
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)