Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_N04
         (897 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052138-1|AAK93562.1| 1071|Drosophila melanogaster SD09502p pro...    32   1.2  
AE014296-2453|AAF49684.2| 1071|Drosophila melanogaster CG5392-PA...    32   1.2  
U02279-1|AAA18301.1|  964|Drosophila melanogaster protein ( Dros...    29   6.5  
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ...    29   6.5  
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ...    29   6.5  
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ...    29   6.5  
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ...    29   6.5  
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ...    29   6.5  

>AY052138-1|AAK93562.1| 1071|Drosophila melanogaster SD09502p
           protein.
          Length = 1071

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 74  VTCLCGVAPELNQCHFVPGRIQSHCVSRGSASVGRH 181
           + C CG+   L QC  +P  + +HC   G+ S  RH
Sbjct: 653 IVCSCGLQGRLEQCQPLPSYMHAHCTLPGARSY-RH 687


>AE014296-2453|AAF49684.2| 1071|Drosophila melanogaster CG5392-PA
           protein.
          Length = 1071

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 74  VTCLCGVAPELNQCHFVPGRIQSHCVSRGSASVGRH 181
           + C CG+   L QC  +P  + +HC   G+ S  RH
Sbjct: 653 IVCSCGLQGRLEQCQPLPSYMHAHCTLPGARSY-RH 687


>U02279-1|AAA18301.1|  964|Drosophila melanogaster protein (
           Drosophila melanogastertelomere-associated transposons
           TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
           cds. ).
          Length = 964

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 675 YYLTFT*WADNWDWNVTTVQTFHVV 601
           Y  TF+ WAD W  +V   +T HV+
Sbjct: 630 YLKTFSDWADKWGISVNAAKTGHVI 654


>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
           protein.
          Length = 1092

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 675 YYLTFT*WADNWDWNVTTVQTFHVV 601
           Y  TF+ WAD W  +V   +T HV+
Sbjct: 758 YLKTFSDWADKWGISVNAAKTGHVI 782


>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 675 YYLTFT*WADNWDWNVTTVQTFHVV 601
           Y  TF+ WAD W  +V   +T HV+
Sbjct: 746 YLKTFSDWADKWGISVNAAKTGHVI 770


>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 675 YYLTFT*WADNWDWNVTTVQTFHVV 601
           Y  TF+ WAD W  +V   +T HV+
Sbjct: 746 YLKTFSDWADKWGISVNAAKTGHVI 770


>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
           protein.
          Length = 1042

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 675 YYLTFT*WADNWDWNVTTVQTFHVV 601
           Y  TF+ WAD W  +V   +T HV+
Sbjct: 708 YLKTFSDWADKWGISVNAAKTGHVI 732


>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 675 YYLTFT*WADNWDWNVTTVQTFHVV 601
           Y  TF+ WAD W  +V   +T HV+
Sbjct: 746 YLKTFSDWADKWGISVNAAKTGHVI 770


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,616,963
Number of Sequences: 53049
Number of extensions: 691784
Number of successful extensions: 1524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)