Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M23
         (1002 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.34 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.78 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 341  APPXPXPPPXAPPPP 385
            APP P  PP APPPP
Sbjct: 1720 APPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 341  APPXPXPPPXAPPPP 385
            AP  P PP   PPPP
Sbjct: 1704 APTPPPPPMSVPPPP 1718


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 405 RGXXKXXGGGGAXGGGXGXGGAR 337
           RG  +  G GGA GG  G GGAR
Sbjct: 32  RGGARGGGRGGARGGRGGRGGAR 54


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
 Frame = +2

Query: 227 RGPPXXXXXRGGGGXPPPXGXGXXXSXPGKSXGLAXXRAPPXPXPPPX--APPPP 385
           R PP     R   G PP        S P          A   P PP    APPPP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 272 PPPXGXGXXXSXPGKSXGLAXXRAPPXPXPPP 367
           PPP         P    G+A    PP P PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 278 GGGXPPPPEXGXXXGGPXSP 219
           GG  PPPP  G    GP  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -3

Query: 286 PXXGGGAPPPPXX-VXRXGAPXPP 218
           P  GG  PPPP   V   G P PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
 Frame = +2

Query: 272 PPPXGXGXXXSXPGKSX--GLAXXRAPPXPXPPPXAPPPP 385
           PPP       S    S     A   A P   PPP APP P
Sbjct: 191 PPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKP 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 997,701
Number of Sequences: 5004
Number of extensions: 12284
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)