Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M23
         (1002 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 344 PPXPXPPPXAPPP 382
           PP P PPP  PPP
Sbjct: 338 PPKPAPPP--PPP 348



 Score = 21.8 bits (44), Expect = 10.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 359 PPPXAPPPP 385
           PP  APPPP
Sbjct: 338 PPKPAPPPP 346


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 384 GGGGAXGGGXGXGGARXXARPXLF 313
           G   A  GG G GGAR    P  +
Sbjct: 591 GVAAASAGGAGGGGARSYVDPHTY 614


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 272 GXPPPPEXGXXXGGP 228
           G PP P  G   GGP
Sbjct: 37  GSPPNPSQGPPPGGP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,982
Number of Sequences: 438
Number of extensions: 2676
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)