Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M20
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   5.2  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 52  P*DFGEYSGMPACAPEFYRLXRSNTELXFSAXQEMLSXXTSFXGFE-AIFLVNVFAYSXR 228
           P D  EY  + AC P FYRL   +  + +   Q  +   + +   E AI+L     Y  R
Sbjct: 628 PIDVPEYD-ISACLPGFYRLCWKDKGILYQDSQIQIGVRSEYHNSEGAIYLY----YENR 682

Query: 229 TXH*XRASAARXVPD-STXHLGTS 297
             +  ++ ++  +   ST HL T+
Sbjct: 683 QSNTLKSLSSTLIRTFSTFHLATT 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,520
Number of Sequences: 5004
Number of extensions: 18119
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)