Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M17
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.53 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.92 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 835 GXXXPXPPPXXVXPPPXXXPPPP 903
           G   P PPP    PP    PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 847 PXPPPXXVXPPPXXXPPPPXXG 912
           P PPP     PP   PPPP  G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 834 GXLXPQXPPXGXXPPPGVXPPPP 902
           G   P  PP G  PP    PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 805 PPXXPLWXKXGXXXPXPPPXXVXPPPXXXPPPP 903
           PP  P+    G   P PPP      P   PPPP
Sbjct: 752 PPPAPIMG--GPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +3

Query: 390 PXXKXPPPPGKRXLXFGAXSXSPPXKPXAPGXXGGEXXFPXPK 518
           P    PPPP       GA    PP  P A    G     P P+
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 847 PXPPPXXVXPPPXXXPPPP 903
           P PPP  +   P   PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 847  PXPPPXXVXPPPXXXPPP 900
            P PPP  V PPP   P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.149    0.520 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,219
Number of Sequences: 5004
Number of extensions: 14844
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)