Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M15
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   4.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   4.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   6.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.0  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.9  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   7.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   7.9  

>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 798 LALNSLILTFIFDQINMESARTPASSLMLTA 706
           L + SL   F+FD IN++   TP+++L + A
Sbjct: 694 LMIYSLYNDFLFDPINLDMDITPSTTLTMCA 724


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 638 RPRTLLSVVNSISSRLTFVEVVSVGSATGLLLSSGCFCF 522
           RP T  + VNSISS + F    SV  A G  L++    F
Sbjct: 94  RPNTANAFVNSISSDVPFDYSESVAEACGFDLNTRVLAF 132


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 163 YHHYDPFQSLRSGKHVGHIRFGPTLANEMQHLDNMMKELSLKFPSIIN 306
           Y H+  F +  S   +GH++    + N    L+ M++++    P+I N
Sbjct: 634 YKHFSKFSARASTTEIGHVKSADRIENS---LNFMLRQILRVTPNIAN 678


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 520  LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV 630
            +K ++PE + +PV    +  ST  + +E E T +++V
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDV 944


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 329 LSPSTRPSFIMLGNFNDSSFIMLSKCCISL--AKVGPKR 219
           LSPSTR   + +  F D   ++L K    +   KV P+R
Sbjct: 582 LSPSTRGIILCISGFTDKLHVLLEKVVAMMRDLKVHPQR 620


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 244  EMQHLDNMMKELSLKFPSIINEGRV 318
            E+++L NM+ EL  KFP +   GR+
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 112 AAVSAAPQYYHGSSHWPYHHYDPFQSL 192
           A  +A PQYY     +P  HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
            catalytic subunit|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
 Frame = -1

Query: 774  TFIFDQIN----MESARTPASSLMLTAYV----FAXTAFAISLVFWAVSKPTSTSPHVAL 619
            +F+F+++     + S RTP     +T  +     +  +F  S V WA+        H+ L
Sbjct: 807  SFVFNKLEAMAQLPSPRTPVLDAGITQALSSKNLSKNSFMTSRVNWAIQSSAVDYLHLLL 866

Query: 618  GGELHLFTTYIRRGRLS 568
                HL   Y    RLS
Sbjct: 867  VSMNHLIKKYYLEARLS 883


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,287
Number of Sequences: 5004
Number of extensions: 63974
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)