Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M15
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    33   0.29 
04_04_0347 + 24564589-24565296                                         30   2.1  
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    29   3.6  
04_04_0719 + 27541129-27541520,27541607-27541965,27542061-275421...    29   3.6  
07_01_0229 - 1672126-1673976,1674427-1675404                           29   4.8  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     29   4.8  
03_05_1128 + 30590727-30590772,30590868-30590939,30591181-305913...    29   6.3  
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713...    28   8.4  

>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 286 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 384
           K   ++ E +VEGD Y + +H PG+  K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +1

Query: 82  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF----QSLRSGKHVGHIRFGPTLA 240
           M  L+   LLAA SAA   +H  ++ PY HH+ P+    QS  +  H  H    P  A
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPWPARAQSPSAPDHGAHGHHAPAPA 62


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 298 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 456
           I ++G++EG +  I  H+P  E  D+ V + +   +   +S   H  K  N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403


>04_04_0719 +
           27541129-27541520,27541607-27541965,27542061-27542189,
           27542278-27542409,27542522-27542794,27542899-27543299,
           27543424-27543567
          Length = 609

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 157 WPYHHYDPFQSLRSGKHVGHIRFGPTLAN 243
           W + H  PF  L+ GK VG+++    +AN
Sbjct: 148 WRFTHRGPFSVLQGGKKVGNVKVMKNVAN 176


>07_01_0229 - 1672126-1673976,1674427-1675404
          Length = 942

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -2

Query: 659 LSPSRRQRP-RTLLSVVNSISSRLTFVEVVSVGSATGLLLS 540
           L+P +  RP +TLLS+  ++S+ LT V  V + +ATG + S
Sbjct: 490 LAPFKMARPTKTLLSMSYNLSAVLTNVAYVGLSAATGQIES 530


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 529 KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRGR*RRL 651
           +QP  SKRP AE T TT++   ++ +E   ++ VR   RR+
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRDNPRRV 735


>03_05_1128 +
           30590727-30590772,30590868-30590939,30591181-30591371,
           30592004-30592067,30592713-30592963,30593066-30593104,
           30593193-30593213
          Length = 227

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 193 RSGKHVG-HIRFGPTLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQK 369
           R+G +V  ++ +  TLA ++Q + + M+EL  +   I+ + + E  KY + +   G+++ 
Sbjct: 5   RTGVYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTK-EQIKYLLGVPSHGFDRS 63

Query: 370 DIN 378
           +++
Sbjct: 64  NMD 66


>05_01_0012 -
           70296-70398,70494-70648,70737-70843,71138-71216,
           71343-71423,71556-72581
          Length = 516

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 124 AAPQYYHGSSHWPYHHYDPFQSLRSGKHVGHIRFGPTLANEMQHLDNMM 270
           AA  ++H   H  +HH+D    L   + +GH    P    E Q LDNM+
Sbjct: 269 AARNHHH---HHHHHHHDLLSVLMQRRQLGH----PDALTEDQILDNML 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,025,480
Number of Sequences: 37544
Number of extensions: 438653
Number of successful extensions: 1338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)