Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M15
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.68 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 535 PEDSKRPVAEPTETTSTNVSREEME 609
           P  +  P  EP+ TTST +S++ ++
Sbjct: 380 PTTTASPTTEPSTTTSTTISQKHIK 404


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 195 FGKACWTHSLWSNLGQRNATLGQHDEGAVVEVPQHYK 305
           FGK        S  G RN  L +HD   + E+  H++
Sbjct: 492 FGKDVLATDERSFSGSRNPLLQEHDSVMLGEISPHHE 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,724
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)