Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M14
         (1247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   2.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   2.2  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 25/117 (21%), Positives = 30/117 (25%)
 Frame = +3

Query: 819  PXXXPPXXKNXPXLQTQXPXSXXTXXXXYPPXXXXXPXXXXXPPXTKXPXPXPPXIPPXS 998
            P   PP     P      P    T     PP     P     PP      P  P +PP  
Sbjct: 261  PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320

Query: 999  XTXXXXPGXPXXXXLPSXXXXXNXHAAXXPPLPRXXKHPQXXXXTPSPXSXXXPXXP 1169
                  P  P    +P        +    PP P   ++P        P     P  P
Sbjct: 321  PPSRFGP--PGMGGMPPPPPPGMRYPGGMPP-PPPPRYPSAGPGMYPPPPPSRPPAP 374


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 25/117 (21%), Positives = 30/117 (25%)
 Frame = +3

Query: 819  PXXXPPXXKNXPXLQTQXPXSXXTXXXXYPPXXXXXPXXXXXPPXTKXPXPXPPXIPPXS 998
            P   PP     P      P    T     PP     P     PP      P  P +PP  
Sbjct: 271  PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330

Query: 999  XTXXXXPGXPXXXXLPSXXXXXNXHAAXXPPLPRXXKHPQXXXXTPSPXSXXXPXXP 1169
                  P  P    +P        +    PP P   ++P        P     P  P
Sbjct: 331  PPSRFGP--PGMGGMPPPPPPGMRYPGGMPP-PPPPRYPSAGPGMYPPPPPSRPPAP 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,647,296
Number of Sequences: 27780
Number of extensions: 111146
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3464240056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)