Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_M13
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 36 0.038
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 35 0.066
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 35 0.066
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 33 0.20
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.20
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.20
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.20
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 33 0.27
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 33 0.27
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 33 0.27
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 33 0.27
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.35
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.35
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 32 0.47
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 32 0.62
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 31 0.82
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 0.82
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 31 1.1
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 31 1.1
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 31 1.4
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 1.4
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 1.4
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.3
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 4.4
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 29 4.4
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 4.4
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 29 4.4
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 29 4.4
Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical pr... 29 5.8
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 29 5.8
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 29 5.8
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 5.8
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 29 5.8
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 5.8
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 29 5.8
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 7.6
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 35.9 bits (79), Expect = 0.038
Identities = 29/88 (32%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGX-FXPP--PXKPLXXPPXXXXPFXXXFX-GPXXGXXXKX 534
P G P P P G PP P +PL PP P GP K
Sbjct: 99 PPGTPGSAGRPGKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKG 158
Query: 535 XXGXXPGAXXPXLXLGKPGXXXPGGPPG 618
G PG P G+PG P GPPG
Sbjct: 159 PLGP-PGPPGPEGPNGEPGNKGPAGPPG 185
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 35.1 bits (77), Expect = 0.066
Identities = 26/95 (27%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPX---KPLXXPPXXXXPFXXXFXGPXXGXXXKXX 537
P G P P P Q G PP +P PP P G
Sbjct: 111 PAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 170
Query: 538 XGXXPGAXXPXLXLGKPGXXXPGGPPGXXWXXXPQ 642
PG G PG P GPPG PQ
Sbjct: 171 EAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQ 205
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 35.1 bits (77), Expect = 0.066
Identities = 26/95 (27%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPX---KPLXXPPXXXXPFXXXFXGPXXGXXXKXX 537
P G P P P Q G PP +P PP P G
Sbjct: 111 PAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 170
Query: 538 XGXXPGAXXPXLXLGKPGXXXPGGPPGXXWXXXPQ 642
PG G PG P GPPG PQ
Sbjct: 171 EAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQ 205
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/87 (28%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGX-FXPP--PXKPLXXPPXXXXPFXXXFXGPXXGXXXKXX 537
P+G P P P Q G PP P +P PP P G
Sbjct: 97 PQGTPGKPGKPGKPGAPGQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNG 156
Query: 538 XGXXPGAXXPXLXLGKPGXXXPGGPPG 618
G P G+PG P GPPG
Sbjct: 157 PPGEQGPKGPDAAPGEPGPKGPIGPPG 183
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGX--FXPPPXKPLXXPPXXXX--PFXXXFXGPXXGXXXKXXX 540
G P P P PQ+ PPP +P P P GP G
Sbjct: 108 GKPGAPGQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNGPP-GEQGPKGP 166
Query: 541 GXXPGAXXPXLXLGKPGXXXPGGPPG 618
PG P +G PG G PG
Sbjct: 167 DAAPGEPGPKGPIGPPGPPGQAGAPG 192
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/83 (25%), Positives = 21/83 (25%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PPP P P PP PP PPP S P
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 324
Query: 542 GXAPGPXPPXSXWXNPGXXXPGG 610
G P PP P P G
Sbjct: 325 GTGSPPPPPRQKRQAPERSPPTG 347
Score = 33.1 bits (72), Expect = 0.27
Identities = 27/100 (27%), Positives = 29/100 (29%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PP G P P PP +PPP PPP P P G
Sbjct: 232 PPAGSPPP---PPPPKGSPPLAGSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPPPA 285
Query: 542 GXAPGPXPPXSXWXNPGXXXPGGPLVXXGXXXPXXGXXPP 661
G +P PP P P G P G PP
Sbjct: 286 GGSP---PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 322
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
P G P P PP+ PPP PP SP + P
Sbjct: 248 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---PPPPPPR 304
Query: 542 GXAP-GPXPPXSXWXNPGXXXPGGP 613
G P G PP +P G P
Sbjct: 305 GSPPTGSLPPPQAGGSPPPAGTGSP 329
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/83 (25%), Positives = 21/83 (25%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PPP P P PP PP PPP S P
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 345
Query: 542 GXAPGPXPPXSXWXNPGXXXPGG 610
G P PP P P G
Sbjct: 346 GTGSPPPPPRQKRQAPERSPPTG 368
Score = 33.1 bits (72), Expect = 0.27
Identities = 27/100 (27%), Positives = 29/100 (29%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PP G P P PP +PPP PPP P P G
Sbjct: 253 PPAGSPPP---PPPPKGSPPLAGSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPPPA 306
Query: 542 GXAPGPXPPXSXWXNPGXXXPGGPLVXXGXXXPXXGXXPP 661
G +P PP P P G P G PP
Sbjct: 307 GGSP---PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 343
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
P G P P PP+ PPP PP SP + P
Sbjct: 269 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---PPPPPPR 325
Query: 542 GXAP-GPXPPXSXWXNPGXXXPGGP 613
G P G PP +P G P
Sbjct: 326 GSPPTGSLPPPQAGGSPPPAGTGSP 350
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/83 (25%), Positives = 21/83 (25%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PPP P P PP PP PPP S P
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 330
Query: 542 GXAPGPXPPXSXWXNPGXXXPGG 610
G P PP P P G
Sbjct: 331 GTGSPPPPPRQKRQAPERSPPTG 353
Score = 33.1 bits (72), Expect = 0.27
Identities = 27/100 (27%), Positives = 29/100 (29%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PP G P P PP +PPP PPP P P G
Sbjct: 238 PPAGSPPP---PPPPKGSPPLAGSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPPPA 291
Query: 542 GXAPGPXPPXSXWXNPGXXXPGGPLVXXGXXXPXXGXXPP 661
G +P PP P P G P G PP
Sbjct: 292 GGSP---PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 328
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
P G P P PP+ PPP PP SP + P
Sbjct: 254 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---PPPPPPR 310
Query: 542 GXAP-GPXPPXSXWXNPGXXXPGGP 613
G P G PP +P G P
Sbjct: 311 GSPPTGSLPPPQAGGSPPPAGTGSP 335
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPP 471
PRG P PP P G + PPP P PP
Sbjct: 152 PRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPP 186
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPP 471
PRG P PP P G + PPP P PP
Sbjct: 152 PRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPP 186
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
G G+PG P GPPG
Sbjct: 172 GLPGQDAAPGEPGPKGPPGPPG 193
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPPGDSGEPGSP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
G G+PG P GPPG
Sbjct: 172 GLPGQDAAPGEPGPKGPKGPPG 193
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
G G+PG P GPPG
Sbjct: 172 GLPGQDAAPGEPGPKGPPGPPG 193
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPS 490
PPP PP R TPPP++P PP PS
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPS 166
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Frame = +2
Query: 365 PPGEXXPXFXPXXXXXXPPKRXXXTPP---PKNPXXXPPPXXSP 487
PP P P P +R TPP P+NP PP P
Sbjct: 150 PPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPP 193
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPS 490
PPP P F P PP PPP P PPP PS
Sbjct: 46 PPPPICPPQFCPPPPMCPPPP-----PPPPPPMCPPPPPPMPS 83
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 32.3 bits (70), Expect = 0.47
Identities = 25/95 (26%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Frame = +1
Query: 337 PXKFSKXXXXPRGXPXXXXPPXX-PXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPX 513
P F+ P G P P P G F P P PP PF P
Sbjct: 347 PGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPG---PFDPSGAPPS 403
Query: 514 XGXXXKXXXGXXPGAXXPXLXLGKPGXXXPGGPPG 618
G P + P G GGPPG
Sbjct: 404 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 438
Score = 31.9 bits (69), Expect = 0.62
Identities = 25/95 (26%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Frame = +1
Query: 337 PXKFSKXXXXPRGXPXXXXPPXX-PXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPX 513
P F+ P G P P P G F P P PP PF P
Sbjct: 227 PGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP---GPFDPSGAPPS 283
Query: 514 XGXXXKXXXGXXPGAXXPXLXLGKPGXXXPGGPPG 618
G P + P G GGPPG
Sbjct: 284 GGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPG 318
Score = 31.9 bits (69), Expect = 0.62
Identities = 25/88 (28%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Frame = +1
Query: 367 PRGXPXXXXPPXX--PXXXPQKGXFXPPPXKPLXXPPXXXXP--FXXXFXGPXXGXXXKX 534
P G P PP P P G P P P PP P F P G
Sbjct: 337 PSGAPPSGGPPGPFNPSGAPPSGG-PPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPF 395
Query: 535 XXGXXPGAXXPXLXLGKPGXXXPGGPPG 618
P + P G GGPPG
Sbjct: 396 DPSGAPPSGGPPGPFNPSGAPPSGGPPG 423
Score = 30.3 bits (65), Expect = 1.9
Identities = 26/96 (27%), Positives = 27/96 (28%), Gaps = 2/96 (2%)
Frame = +1
Query: 337 PXKFSKXXXXPRGXPXXXXPPXX--PXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGP 510
P F P G P P P P G F P P PP PF P
Sbjct: 287 PGPFDPSGAPPSGGPPGPFDPSGAQPSGGPP-GPFNPSGAPPSGGPPG---PFDPSGAPP 342
Query: 511 XXGXXXKXXXGXXPGAXXPXLXLGKPGXXXPGGPPG 618
G P + P G GGPPG
Sbjct: 343 SGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 378
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/93 (24%), Positives = 24/93 (25%), Gaps = 1/93 (1%)
Frame = +1
Query: 337 PXKFSKXXXXPRGXPXXXXPPXX-PXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPX 513
P F P G P P P G F P +P PP P G
Sbjct: 272 PGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGP 331
Query: 514 XGXXXKXXXGXXPGAXXPXLXLGKPGXXXPGGP 612
G G P G P P GP
Sbjct: 332 PGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGP 364
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 117 GNPGRPGKPGAPGLPGNPGKPPVQPCEPITPPPCKPCPDGPAGPPGPPGAPGDAGTNGAP 176
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
GA G+ G P GPPG
Sbjct: 177 GAPGGDAPPGEAGPKGPPGPPG 198
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.82
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAGANGNP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
GA G PG P GP G
Sbjct: 172 GAPGQDGQPGAPGNKGPSGPNG 193
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 31.5 bits (68), Expect = 0.82
Identities = 22/82 (26%), Positives = 24/82 (29%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +PL PP P G P
Sbjct: 113 GRPGTPGRPGAPGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGPPGPP 172
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
G P G+PG P GP G
Sbjct: 173 GHDGPNGGPGQPGQPGPHGPNG 194
Score = 31.5 bits (68), Expect = 0.82
Identities = 26/88 (29%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPP----PXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXX 540
G P P P P + PP P P P P GP
Sbjct: 122 GAPGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGPPGPPGHDGPNGGP 181
Query: 541 GXX--PGAXXPXLXLGKPGXXXPGGPPG 618
G PG P GKPG P GPPG
Sbjct: 182 GQPGQPGPHGPNGHPGKPGSQGPPGPPG 209
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = -1
Query: 567 GGXGPGAXPXXXFXXXPXXGXXEXXXEGXXXGGGXXKGFXGGGVKXXLLGGXXXXXXGXX 388
GG G G G G GGG G+ GGG +GG G
Sbjct: 145 GGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGG 204
Query: 387 XGXXSPGGG 361
G GGG
Sbjct: 205 YGGGGMGGG 213
Score = 30.3 bits (65), Expect = 1.9
Identities = 40/153 (26%), Positives = 45/153 (29%)
Frame = -1
Query: 819 GXFGEXGXXLGGGXFGRRXXGXGVCRXGXEGXGFWXXXXXXXXXXXXGVLXXRGGXXPXL 640
G +G+ G GGG FG G G G G G G + GG
Sbjct: 92 GGYGQGGYG-GGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGM---GGGPGGY 147
Query: 639 GXXXPXXTRGPPGXXXPGFXQXEXGGXGPGAXPXXXFXXXPXXGXXEXXXEGXXXGGGXX 460
G G G G+ GG G G + G G GGG
Sbjct: 148 GMGG-YGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYG 206
Query: 459 KGFXGGGVKXXLLGGXXXXXXGXXXGXXSPGGG 361
G GGG G G G PGGG
Sbjct: 207 GGGMGGGGYGG-GGDGGYGPSGGYGGGYGPGGG 238
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGX-FXPP--PXKPLXXPPXXXXPFXXXFX-GPXXGXXXKX 534
P G P P P G PP P +P+ PP P GP K
Sbjct: 97 PPGTPGRAGRPGKPGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPPGPAGPPGPQGNKG 156
Query: 535 XXGXXPGAXXPXLXLGKPGXXXPGGPPG 618
G PG P G G P GPPG
Sbjct: 157 PLGP-PGPPGPEGPNGTAGNKGPAGPPG 183
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAGANGNP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
GA G PG P GP G
Sbjct: 172 GAPGNDGQPGAPGNKGPSGPNG 193
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAGANGNP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
GA G PG P GP G
Sbjct: 172 GAPGNDGQPGAPGNKGPSGPNG 193
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/102 (24%), Positives = 26/102 (25%), Gaps = 2/102 (1%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PPP P P PP PPP P P P
Sbjct: 274 PPPMPPTPGMTPRPP---PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM 330
Query: 542 GXAPGPXPPXSXWXN--PGXXXPGGPLVXXGXXXPXXGXXPP 661
G P P PP + P P P G P PP
Sbjct: 331 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPP 372
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/102 (24%), Positives = 26/102 (25%), Gaps = 2/102 (1%)
Frame = +2
Query: 362 PPPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXX 541
PPP P P PP PPP P P P
Sbjct: 284 PPPMPPTPGMTPRPP---PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM 340
Query: 542 GXAPGPXPPXSXWXN--PGXXXPGGPLVXXGXXXPXXGXXPP 661
G P P PP + P P P G P PP
Sbjct: 341 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPP 382
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAGANGNP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
GA G PG P GP G
Sbjct: 172 GAPGNDGQPGAPGNKGPSGPNG 193
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P +P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAGANGNP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
GA G PG P GP G
Sbjct: 172 GAPGNDGQPGAPGNKGPSGPNG 193
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +2
Query: 365 PPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPS 490
PPG P F PP+ P P+ P PP PS
Sbjct: 137 PPGPPRPHFPGPPGPHRPPEHYPGPPRPQAPAAPPPKSLFPS 178
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 368 PGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPP 475
P E P P PP + PPP P PPP
Sbjct: 69 PTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPP 104
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 368 PGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPP 475
P E P P PP + PPP P PPP
Sbjct: 291 PTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPP 326
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -3
Query: 490 GRGXXWXGXXXGVFXGGGXXXPFGGXXXGXXGXKXRXGFPGG 365
GRG G G GGG +GG G G R GF GG
Sbjct: 18 GRGGDRGGSRGGF--GGGGRGGYGGGDRGSFGGGDRGGFRGG 57
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Frame = +2
Query: 365 PPGEXXPXFXPXXXXXXPPKRXXXTPPPKNPXXXPPPXXSPSXXXSXXP--XXGXXXXXX 538
PPG+ P PP PPP P PPP + P G
Sbjct: 53 PPGQSIPK---PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109
Query: 539 XGXAPGPXPPXS 574
AP P PP S
Sbjct: 110 MFGAPPPPPPPS 121
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Frame = +2
Query: 440 PPPKNPXXXPPPXXSPSXXXSXXPXXGXXXXXXXGXA--PGPXPPXSXWXNPGXXXPGGP 613
P P P P P +P P G A PGP P PG PGGP
Sbjct: 164 PCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPG--QPGGP 221
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +2
Query: 362 PPPGEXXPXFX----PXXXXXXPPKRXXXTPPPKNPXXXPPPXXSP 487
PPPG P P PP PPP P PPP P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +2
Query: 362 PPPGEXXPXFX----PXXXXXXPPKRXXXTPPPKNPXXXPPPXXSP 487
PPPG P P PP PPP P PPP P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +2
Query: 362 PPPGEXXPXFX----PXXXXXXPPKRXXXTPPPKNPXXXPPPXXSP 487
PPPG P P PP PPP P PPP P
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/82 (24%), Positives = 22/82 (26%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P P+ PP P G P
Sbjct: 79 GKPGRPGKPGAPGLPGNPGHPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNGNP 138
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
G+ G PG P GP G
Sbjct: 139 GSPGQDGQPGAPGNKGPSGPNG 160
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/82 (24%), Positives = 22/82 (26%)
Frame = +1
Query: 373 GXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGXXP 552
G P P P G P P+ PP P G P
Sbjct: 112 GKPGRPGKPGAPGLPGNPGRPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNGNP 171
Query: 553 GAXXPXLXLGKPGXXXPGGPPG 618
G+ G PG P GP G
Sbjct: 172 GSPGQDGQPGAPGNKGPSGPNG 193
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXP 486
P G P PP P PPP P PP P
Sbjct: 109 PAGYPPYGMPPRHHPGYPHPAYGYPPPGAPYGYPPQMMRP 148
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 486 GXXXGGGXXKGFXGGGVKXXLLGGXXXXXXGXXXGXXSPGGG 361
G GGG +G GGG +LGG G G + GGG
Sbjct: 109 GGGGGGGQRQGGGGGGF-GDILGGIGSLIGGGGGGQYNGGGG 149
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 486 GXXXGGGXXKGFXGGGVKXXLLGGXXXXXXGXXXGXXSPGGG 361
G GGG +G GGG +LGG G G + GGG
Sbjct: 134 GGGGGGGQRQGGGGGGF-GDILGGIGSLIGGGGGGQYNGGGG 174
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 486 GXXXGGGXXKGFXGGGVKXXLLGGXXXXXXGXXXGXXSPGGG 361
G GGG +G GGG +LGG G G + GGG
Sbjct: 155 GGGGGGGQRQGGGGGGF-GDILGGIGSLIGGGGGGQYNGGGG 195
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/88 (29%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKP--LXXPPXXXXPFXXXFXGPXXGXXXKXXX 540
P G P P P G PP +P L PP P GP +
Sbjct: 98 PTGEPGRPGRPGKPGVPGMPGNPGKPPQQPCELVTPP----PCSPCPAGPPGKPGPQGAP 153
Query: 541 GXX--PGAXXPXLXLGKPGXXXPGGPPG 618
G PG G+PG P GPPG
Sbjct: 154 GDIGQPGNPGERGMDGEPGPPGPTGPPG 181
>Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical
protein T06D8.9 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = -2
Query: 602 GXXXPGXPKXXXGXXAPGXXPXXXLXFXPXXGPXKXXXKGXXXXGGXXRGFXGGG 438
G PG P G PG P + P +G GG +G GG
Sbjct: 185 GSGGPGGPGSGGGGGGPGGYPSAPPPYDDYSKPPPYGFRGDSQSGGGCQGSSSGG 239
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 550 PGAXXPXLXLGKPGXXXPGGPPG 618
PGA P G+PG P GPPG
Sbjct: 219 PGAQGPPGEDGRPGNSGPQGPPG 241
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXX-KXXXG 543
P G P PP P + G P P P P GP K G
Sbjct: 211 PPGQPGPDGPPGAPGNAGEDGK--PGDQGPRGPPGIPGAPGQPGRPGPPGEPGTYKTEVG 268
Query: 544 XXPGAXXPXLXLGKPGXXXPGGPPG 618
A P G PG P GPPG
Sbjct: 269 PAGRAGAPGRP-GPPGQPGPAGPPG 292
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/84 (28%), Positives = 28/84 (33%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGX 546
P G P P++ F PPP P P P F G + G
Sbjct: 142 PDGAPGRPGTTPNASCIPER-VFEPPPCLPCPQGPRGV-PGHPGFPGDPG----EYGIGG 195
Query: 547 XPGAXXPXLXLGKPGXXXPGGPPG 618
PG+ G PG P GPPG
Sbjct: 196 RPGSDGMPGKPGDPGLAGPIGPPG 219
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXX-KXXXG 543
P G P PP P + G P P P P GP K G
Sbjct: 192 PPGQPGPDGPPGAPGNAGEDGK--PGDQGPRGPPGIPGAPGQPGRPGPPGEPGTYKTEVG 249
Query: 544 XXPGAXXPXLXLGKPGXXXPGGPPG 618
A P G PG P GPPG
Sbjct: 250 PAGRAGAPGRP-GPPGQPGPAGPPG 273
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/84 (28%), Positives = 28/84 (33%)
Frame = +1
Query: 367 PRGXPXXXXPPXXPXXXPQKGXFXPPPXKPLXXPPXXXXPFXXXFXGPXXGXXXKXXXGX 546
P G P P++ F PPP P P P F G + G
Sbjct: 142 PDGAPGRPGTTPNASCIPER-VFEPPPCLPCPQGPAGV-PGHPGFPGDPG----EYGIGG 195
Query: 547 XPGAXXPXLXLGKPGXXXPGGPPG 618
PG+ G PG P GPPG
Sbjct: 196 RPGSDGMPGKPGDPGLAGPIGPPG 219
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 550 PGAXXPXLXLGKPGXXXPGGPPG 618
PG P GKPG P GPPG
Sbjct: 176 PGETGPQGHQGKPGRAGPRGPPG 198
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/95 (28%), Positives = 29/95 (30%), Gaps = 2/95 (2%)
Frame = -1
Query: 639 GXXXPXXTRGPP--GXXXPGFXQXEXGGXGPGAXPXXXFXXXPXXGXXEXXXEGXXXGGG 466
G P R P G G+ + GG GPG G G GGG
Sbjct: 23 GPPSPWGFRPSPFFGGRSGGWGRPGWGGGGPG---WGRGGGGSGWGGGRGGGWGNNGGGG 79
Query: 465 XXKGFXGGGVKXXLLGGXXXXXXGXXXGXXSPGGG 361
G GGG GG G G GGG
Sbjct: 80 NWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGG 114
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/93 (24%), Positives = 24/93 (25%)
Frame = -1
Query: 639 GXXXPXXTRGPPGXXXPGFXQXEXGGXGPGAXPXXXFXXXPXXGXXEXXXEGXXXGGGXX 460
G P G PG + GG G A P G GGG
Sbjct: 278 GPPGPPGNDGQPGGPGQPGGPGQDGGPGTDAAYCPCPPRTPAGGGGGGDFPAGGGGGGYS 337
Query: 459 KGFXGGGVKXXLLGGXXXXXXGXXXGXXSPGGG 361
G GG G G G GGG
Sbjct: 338 TGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGG 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,982,552
Number of Sequences: 27780
Number of extensions: 182224
Number of successful extensions: 2137
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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