Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M10
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.058
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.058
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.31 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.41 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   5.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.7  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   8.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.058
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
 Frame = +2

Query: 752 PPXPKPXPXXPXRPPAGRXL--FXXPPPPPPXXXTTKKNXP-XSXGXXPPPP 898
           PP P P      +PP G        PPPPPP       + P    G   PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
 Frame = +2

Query: 746 SXPPXPKPXPXXPXRPPAGRXLFXXPPPPPPXXXTTKK---NXPXSXGXXPPPP 898
           S PP P P         A       PPPPP      K    N   +    PPPP
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
 Frame = +3

Query: 549 PPPPXQXXXPXXGXXPLXXXKKXXXPPSXXXXRGXTTXSPXTXXXAXSXS-PPNNXXXPP 725
           PPPP        G  PL    +   PP        T   P     + + S PP      P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 726 XEKXXXFPPPPXXNRXQXXPNARP 797
                  PP    +R    P   P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTP 420



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
 Frame = +3

Query: 540 KKPPPPPXQXXXPXXGXXPL-XXXKKXXXPPSXXXXRGXTTXSPXTXXXAXSXSPPNNXX 716
           K+PPPPP        G  P+         PP     R     S        S  PP    
Sbjct: 309 KRPPPPPPPSRR-NRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 717 XPPXEKXXXFPPPPXXNRXQXXPNARP 797
             P       PPP   +R    P A P
Sbjct: 368 SAP--STGRQPPPLSSSRAVSNPPAPP 392



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 29/122 (23%), Positives = 33/122 (27%), Gaps = 5/122 (4%)
 Frame = +2

Query: 548 PPPPXXKXXPXXGX-PPXFXXKKXX--PPTLXXXXAGXNXXFSSHXXXGXXAFSPKQXXG 718
           PPPP  +  P  G  PP     +    PP       G +              +P     
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP---- 416

Query: 719 XPXXKXXFXSXPPX--PKPXPXXPXRPPAGRXLFXXPPPPPPXXXTTKKNXPXSXGXXPP 892
            P       S PP   P   P  P   PA   L    P  PP         P       P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476

Query: 893 PP 898
           PP
Sbjct: 477 PP 478


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.058
 Identities = 20/48 (41%), Positives = 21/48 (43%)
 Frame = +2

Query: 755 PXPKPXPXXPXRPPAGRXLFXXPPPPPPXXXTTKKNXPXSXGXXPPPP 898
           P P P P  P  PPA   +   PPPPPP         P   G  PPPP
Sbjct: 742 PTPAPAPI-PVPPPA--PIMGGPPPPPPP--------PGVAGAGPPPP 778



 Score = 29.5 bits (63), Expect = 0.72
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 752 PPXPKPXPXXPXRPPAGRXLFXXPPPPPP 838
           PP P      P  PP G      PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 755 PXPKPXPXXPXRPPAGRXLFXXPPPPPP 838
           P P P    P  PP    +    PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
 Frame = +2

Query: 701  PKQXXGXPXXKXXFXSXPPXPKP------XPXXPXRPPAGRXLFXXPPPPPPXXXTTKKN 862
            PK     P         PP PKP       P     PP  +     PP PPP   +T   
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP---STAPP 1218

Query: 863  XPXSXGXXPPPP 898
             P      PP P
Sbjct: 1219 VPTPSAGLPPVP 1230



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/60 (26%), Positives = 18/60 (30%)
 Frame = +2

Query: 716  GXPXXKXXFXSXPPXPKPXPXXPXRPPAGRXLFXXPPPPPPXXXTTKKNXPXSXGXXPPP 895
            G P       + PP P P       PP  +     PP PPP                PPP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGI---PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
 Frame = +2

Query: 752  PPXPKPX------PXXPXRPPAGRXLFXXPPPPPPXXXTTKKNXPXSXGXXPPPP 898
            PP PKP       P     PP  +     PP P P         P +     PPP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 761 PKPXPXXPXRPPAGRXLFXXPPPPPPXXXTTKKN 862
           P   P  P  PP        PPPPPP     +KN
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKN 38



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 752 PPXPKPXPXXPXRPPAGRXLFXXPPPPPPXXXTTKKNXPXSXG 880
           PP P P    P +PP        PPPPP      K   P   G
Sbjct: 11  PPPPPPGFEPPSQPP--------PPPPPGYVKKRKNKTPAQSG 45


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 755  PXPKPXPXXPXRPPAGRXLFXXPP--PPPPXXXTTKKNXP 868
            P P P P     PP+   +   PP  PPPP   ++  + P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 752  PPXPKPXPXXPXRPPAGRXLFXXPPPPPP 838
            PP P   P  P  PP        PPPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = +2

Query: 752  PPXPKPXPXXPXRPPAGRXLFXXPPPPPPXXXTTKKNXPXSXGXXP 889
            PP P P       PP+       PP  PP   T     P      P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 5.9
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 755 PXPKPXPXXPXRPPAGRXLFXXPPPPPP 838
           P P   P     P         PPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPP 194



 Score = 21.0 bits (42), Expect(2) = 5.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 827 PPPPXXXTTKKNXPXSXGXXPPPP 898
           P  P   T K+  P      PPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/60 (26%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
 Frame = +2

Query: 722 PXXKXXFXSXPPXPKPXPXXPXRPPAGRXLFXXPPPPPPXXXT-TKKNXPXSXGXXPPPP 898
           P  K      PP P P P     PP         P  PP   T    + P +    P  P
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPESP 780


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 544 NPPPPPXKXXXRXXXPXXFXXQKKXXXHPPXXLXG 648
           NPPPPP +   R   P     + +    PP    G
Sbjct: 47  NPPPPPTRLHDRSFKPVSKNYESEGRLTPPPVSMG 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,022
Number of Sequences: 5004
Number of extensions: 17614
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)