Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M09
         (981 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.58 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.79 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect(2) = 0.58
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 914 PPXXPPPXPPPXAXXXGPXXA 976
           PP   PP PPP +   GP  A
Sbjct: 338 PPKPAPPPPPPSS--SGPDSA 356



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 900 PPXXXPPXPPP 932
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.4 bits (43), Expect(2) = 0.58
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 761 GXXXXPXKGAPPPP 802
           G    P K APPPP
Sbjct: 333 GDSDTPPKPAPPPP 346


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.79
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 825 PXPPPXAXXXXXPPPXXXQKXPRXAPPXXXPPXPPP 932
           P P P        P       P   PP   PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +1

Query: 808 QXXKXPPXPPPXPXXXGPPXPXXSKXXPXXPXPXXXPPXPPP 933
           Q     P P P P          S   P    P   PP  PP
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 890 PXRPXXXXPPXXPPPXPP 943
           P  P    PP  PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 890 PXRPXXXXPPXXPPPXPPPXA 952
           P R     P   PPP  PP A
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGA 54



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 761 GXXXXPXKGAPPPPXXNXXN 820
           G    P  GAP PP  N  N
Sbjct: 406 GGQLPPSAGAPMPPIPNMSN 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,431
Number of Sequences: 438
Number of extensions: 9792
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)