Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_M08
(1343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 36 0.017
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.21
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.21
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.48
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.84
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 29 1.5
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 28 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 3.4
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 27 4.5
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 35.5 bits (78), Expect = 0.017
Identities = 21/67 (31%), Positives = 22/67 (32%)
Frame = +3
Query: 897 PPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPPETHPHX 1076
PP R APP P PP P P P P PP P A P +P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP-ASSAPSVPNPGD 1748
Query: 1077 RQXXXXQ 1097
R Q
Sbjct: 1749 RSALLQQ 1755
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQ-PXPPTP 1010
PPP P PP+ P PP P P + P P P
Sbjct: 1708 PPPPMSVP-PPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/59 (27%), Positives = 20/59 (33%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPPETHP 1070
PP + P + P PP P PP P +P AP K P + P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQ-PXPPTPPXXKXXXRPXAPRKPP 1058
PPP APP PP P P P PP+ P P P+ PP
Sbjct: 150 PPPS--PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/58 (32%), Positives = 21/58 (36%)
Frame = +3
Query: 897 PPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPPETHP 1070
PP P PP+ PP P P P + P PP P P AP P P
Sbjct: 144 PPRPSIP--PPSPASAPPIP--SKAPPIPSSLP-PPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 28.3 bits (60), Expect = 2.6
Identities = 22/103 (21%), Positives = 29/103 (28%)
Frame = +1
Query: 496 PXXPXPPXXPPXXRXXPXXXXXQNXXXPTPRXAPPXXXPXXAXGXXXPXHGPGXXPXXXR 675
P P PP R + P+P APP P A P +
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP--IPSKAPPIPSSLPPPAQPAAPVK 182
Query: 676 XXPXPPRXPRXSXRXPXXAXPPXXTPXXXPXTTAXXTGPTXPA 804
P P P P PP + T++ + PA
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPA 225
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPP 1058
PPP P P PP P P P PP PP P P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGP------PPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.84
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPPETHP 1070
P P P AP PP PP P P PP P R AP E P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGP-PPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = +3
Query: 915 PHAPPTXXXXPPXP-PXKHXPKXPXT-QPXPPTPPXXKXXXRPXAPRKPP 1058
P PP P P P P P P PP PP P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.48
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXK--XXXRPXAPRKPP 1058
P P P APP+ PP P P P PP+ P P AP PP
Sbjct: 418 PTPPSLPPSAPPS---LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Frame = +3
Query: 894 PP--PXRXXPHAPPT-XXXXPPXPPXKHXPKXPXTQP--XPPTPPXXKXXXRPXAPRKPP 1058
PP P R P PP PP P P + P PP+ P P AP PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Frame = +3
Query: 894 PPPXRXXPHAPP-----TXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPP 1058
PPP R PP + PP PP P P PP + P PR P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 1059 ET 1064
T
Sbjct: 371 ST 372
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.84
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXP-XTQPXPPTPP 1013
P P P P PP PP P P + PP PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTP-PXXKXXXRPXAPRKPP 1058
PPP P P+ P PP P + PP P P K P + P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXP-PXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPPETHP 1070
P P P P PP P P P P PP P P P PP T P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV--PPVP--PPSTAP 1217
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/72 (25%), Positives = 19/72 (26%)
Frame = +1
Query: 592 APPXXXPXXAXGXXXPXHGPGXXPXXXRXXPXPPRXPRXSXRXPXXAXPPXXTPXXXPXT 771
APP P A P P PP P S P P P P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090
Query: 772 TAXXTGPTXPAP 807
P+ AP
Sbjct: 1091 IPPVPKPSVAAP 1102
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/39 (30%), Positives = 12/39 (30%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTP 1010
P P P PP P P P P PP P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 948 PXPPXKHXPKXPXTQPXPPTPP 1013
P P K K P + P PPTPP
Sbjct: 159 PSKPSKPRKKVPVSHPLPPTPP 180
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein Lsb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/60 (25%), Positives = 20/60 (33%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKPPETHPH 1073
PPP + PP P + P P PP + +P +P E H H
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQPIVVAQPTE-HKH 264
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 924 PPTXXXXPPXPPXKHXPKXPXTQPXPPTPP 1013
PP PP PP P +QP PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPP----SQPPPPPPP 30
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +3
Query: 894 PPPXRXXPHAPPTXXXXPPXPPXKHXPKXPXTQPXPPTPPXXKXXXRPXAPRKP 1055
PPP P A P PP + P T+ PPT P + P P
Sbjct: 79 PPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTE--PPTVPAYETSSEFPPPAYP 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.304 0.131 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,899
Number of Sequences: 5004
Number of extensions: 20404
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 739230216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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