Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M06
         (1506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPP 65
           PP PPP   G   PP  P PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPP 65
           PP PPP       PP  P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPP 65
           PP PPP  G   +PP  P  P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRP 274


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
          Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 3  PPSPPPXRGGXXTPPTXPXPP 65
          PP PPP  G    PP+ P PP
Sbjct: 9  PPPPPPPPG--FEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 946,192
Number of Sequences: 5004
Number of extensions: 5780
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 842423950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)