Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_M06
         (1506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    31   2.8  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.7  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   8.6  

>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXP 62
           PP PPP  GG   PP  P P
Sbjct: 41  PPPPPPCGGGYEAPPPPPPP 60



 Score = 29.9 bits (64), Expect = 4.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPPRSXXXP 83
           PP PPP  GG    P  P PP     P
Sbjct: 40  PPPPPPPCGGGYEAPPPPPPPSYAGGP 66


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXP 62
           PP PPP  GG   PP  P P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPP 777



 Score = 29.1 bits (62), Expect = 8.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPP 65
           PP PPP  GG    P  P PP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXP 62
           PP PPP  GG   PP  P P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPP 777



 Score = 29.1 bits (62), Expect = 8.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPP 65
           PP PPP  GG    P  P PP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXP 62
           PP PPP  GG   PP  P P
Sbjct: 341 PPPPPPPPGGCPPPPPPPPP 360



 Score = 29.1 bits (62), Expect = 8.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPP 65
           PP PPP  GG    P  P PP
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPP 373


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 7   LPXPRXAXAXPXPXPXPXPPXPP 75
           +P P  A   P P P P PP PP
Sbjct: 776 IPPPFFALPVPPPPPVPPPPPPP 798


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   PPSPPPXRGGXXTPPTXPXPPRSXXXP 83
           PP PPP  GG   PP  P PP     P
Sbjct: 579 PPPPPPMLGG---PPPPPPPPGGLMGP 602


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,220,520
Number of Sequences: 27780
Number of extensions: 69815
Number of successful extensions: 1470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)