Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_M05
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 52 1e-07
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 45 1e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 2e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 8e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 0.001
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.013
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 35 0.018
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 35 0.018
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.018
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.023
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 34 0.023
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.041
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 33 0.041
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.041
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.041
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.054
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.094
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.12
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 31 0.22
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.22
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.22
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.29
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.38
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.38
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.50
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.50
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.66
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.5
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 2.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 2.0
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.7
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.5
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 4.7
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 4.7
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 26 8.1
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 26 8.1
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 51.6 bits (118), Expect = 1e-07
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Frame = +2
Query: 497 MYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 661
++ FSA GKI SCK+ + +GYGFV ++ E A A NG+L+ K + V
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH 243
Query: 662 LLNPE--NKVSHKPDTESNLYISHLPPDMTLERIXTPFSPFG 781
+ E +KV +N+YI +L ++T + F FG
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG 285
Score = 48.8 bits (111), Expect = 1e-06
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Frame = +2
Query: 377 SNNKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIES---CKLI 547
S + T + + G A T+ S L V + +T M++ LF+++G + S C+
Sbjct: 59 STSTPTNASSVATPSGTAPTSAS---LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA 115
Query: 548 ANR---GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLY 718
R GY +V + ED EKA N L++G+ ++ ++ +P + K T N++
Sbjct: 116 VTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLR---KMGT-GNVF 171
Query: 719 ISHLPPDMTLERIXTPFSPFG 781
I +L P + + + FS FG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFG 192
Score = 43.6 bits (98), Expect = 4e-05
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Frame = +2
Query: 449 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAA 613
T + + + +T LF G+I S L+ + RG+GFV Y HE A+KA
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 614 FNGLLMQGKTLKVSFALLNPENKVSHKPDTES------------NLYISHLPPDMTLERI 757
N +GK L V A E + + E NL+I +L ++ ER+
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 758 XTPFSPFG 781
FS FG
Sbjct: 381 KAEFSAFG 388
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 45.2 bits (102), Expect = 1e-05
Identities = 27/71 (38%), Positives = 34/71 (47%)
Frame = +2
Query: 440 VSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFN 619
+S T+L V IP TR+ M F G+I CKL+ G+GFVE E DA F
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLM--NGFGFVEVEDARDARDIVNDFQ 58
Query: 620 GLLMQGKTLKV 652
G G + V
Sbjct: 59 GKEFMGSRIVV 69
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 551 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTL 646
N G G VE+ ED A + NG +++G+ +
Sbjct: 133 NPGAGVVEFSTEEDMRNALTSLNGEVIKGQAV 164
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +2
Query: 455 LMVNYIPELMTRDMMYALFSAMGKIESCKLIA------NRGYGFVEYEKHEDAEKARAAF 616
L V + L+ ++Y FSA+G++ +A ++GYGFV Y+ E A+ A A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 617 NGLLMQGKTLKVSFA 661
N + K + VS+A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.1 bits (87), Expect = 8e-04
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Frame = +2
Query: 431 NTNVSPTKLMVNYIPE--LMTRDMMYALFSAMGKIESCKLIA------NRGYGFVEYEKH 586
N+ + P+ L V + + + + + LFS G I S L ++GYGFV + +
Sbjct: 376 NSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQI 435
Query: 587 EDAEKARAAFNGLLMQGKTLKVSFA 661
E A +A+ NG+++ K + V FA
Sbjct: 436 EAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +2
Query: 443 SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKA 604
S + L V + +D + FS +G I+ ++ N RGYGFV + EDA++A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 605 RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESN 712
+ G+ L++ FA ++V DT+ N
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEV----DTDQN 94
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.7 bits (86), Expect = 0.001
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +2
Query: 440 VSPTKLMVNYIPELMTRD--MMYALFSAMGKIESCKLIA------NRGYGFVEYEKHEDA 595
+ P L V + + + + + LFS G+I+SC L + ++GYGFV + +A
Sbjct: 416 IDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEA 475
Query: 596 EKARAAFNGLLMQGKTLKVSFALLNPENK 682
+A NG+L K L V++A + K
Sbjct: 476 VQAINTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 560 YGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSF 658
+ F+ +E A+ A A+ NG QG TLKV +
Sbjct: 68 FAFITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.1 bits (77), Expect = 0.013
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 455 LMVNYIPELMTRDMMYALFSAMGKIESCKL---IANRGYGFVEYEKHEDAEKARAAFNGL 625
L + + +T + MY LF G + +L + RG FV YE +DA +A +G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 626 LMQGKTLKVSFALLNPE 676
+ L V + NPE
Sbjct: 74 NFMDRYLVVHY--YNPE 88
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 506 LFSAMGKIESCKLIANRG------YGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 661
+FS GKI SC++I ++ Y F+E++ E EKA +L+ + V F+
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFS 320
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.7 bits (76), Expect = 0.018
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 551 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNL-YISH 727
++G+G V++E DA + NG G+ L++S+A + + P S L +++
Sbjct: 319 SKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA--HYATPLPAVPTVLSGLPSVAY 376
Query: 728 LPPDMTLERIXTPFSP 775
PP M + +P +P
Sbjct: 377 TPPVMHIPTTNSPLTP 392
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.7 bits (76), Expect = 0.018
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +2
Query: 482 MTRDMMYALFSAMGKIESCKL-----IANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTL 646
+T ++Y F G+I S L +R Y FVE+++ EDA++A N ++ + +
Sbjct: 17 VTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCI 76
Query: 647 KVS---FALLNPENKV 685
+VS FAL E V
Sbjct: 77 RVSPANFALSAEETAV 92
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 34.3 bits (75), Expect = 0.023
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Frame = +2
Query: 380 NNKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLI---- 547
NN+ T + E + L V+ I M D + +FS G + +++
Sbjct: 78 NNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV 137
Query: 548 --ANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 661
A+RG+GF+ + E+A A N G+ L V A
Sbjct: 138 TKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 34.3 bits (75), Expect = 0.023
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +2
Query: 464 NYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQG-- 637
++I + +T + + + G+IES K + NR GFV Y +A K A NGL +
Sbjct: 505 SHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMK---AVNGLPIHPLF 561
Query: 638 KTLKVSFALLNPENKVSHKPDTESNLYISHLPPDMTLERIXTP 766
K K+ +A P+ ++SN S + ++ L++ TP
Sbjct: 562 KKSKIRYA---PDRCEQELQKSKSN---SPIQQNVPLQQFITP 598
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 33.5 bits (73), Expect = 0.041
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = +2
Query: 554 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISHLP 733
R Y FV+++ +DA KA + ++ G+ +++ A +N ++S P
Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPH----------Q 170
Query: 734 PDMTLERIXTPFSPFG*HXEXPXVPXVSGFV 826
P +T + I P+G + +P S F+
Sbjct: 171 PYITKKDIDNLLEPYGEVEDVTEIPDQSAFL 201
Score = 32.7 bits (71), Expect = 0.071
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +2
Query: 440 VSPTKLMVNYI-PELMTRDMMYALFSAMGKIESCKLI---ANRGYGFVEYEKHEDAEKAR 607
+ P + V + P T ++ LFS GK+ CK+I + F+ ++ + A A
Sbjct: 362 IDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAV 421
Query: 608 AAFNGLLMQGKTLKVSFALLNPENKVS 688
Q K L+V F L P + S
Sbjct: 422 CGKTRSPHQKKPLRVEFRQLRPMQQFS 448
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.5 bits (73), Expect = 0.041
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Frame = +2
Query: 443 SPTKLMVNYI-PELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFN 619
S ++L + ++ + +++ ++ +F G + L AN YGFV++ +ED +A A
Sbjct: 361 SASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN--YGFVQFFTNEDCARALNAEQ 418
Query: 620 GLLMQGKTLKVSFALLNP------ENKVSHKPDTESNLY---ISHLP-PDMTLERIXTPF 769
G ++G+ L + + + EN T+SN Y I +LP P + +R +P
Sbjct: 419 GNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSPL 478
Query: 770 SPFG 781
G
Sbjct: 479 MSKG 482
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.5 bits (73), Expect = 0.041
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 551 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDT 703
+R YGFV + ++ + A G L QG+ L++S A +P+++ S D+
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA--SPKSRASIAADS 271
Score = 33.1 bits (72), Expect = 0.054
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +2
Query: 449 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLL 628
T + V + ++ + F G+I + K+ +G GFV+Y + AEKA G L
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGAL 356
Query: 629 MQGKTLKVSF 658
+ +++++
Sbjct: 357 VGTSHIRLAW 366
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.5 bits (73), Expect = 0.041
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +2
Query: 521 GKIESCKLIAN------RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 682
GK+ S K I + +GYGF +E+ + A +A Q K SF+ +
Sbjct: 320 GKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAMTLCGYQCSFAKESFSA-----R 374
Query: 683 VSHKPDTES-NLYISHLPPDMTLERIXTPFSP 775
+ DTES NLYIS+LP I T F P
Sbjct: 375 LQSLQDTESTNLYISNLPLHWNESDISTLFKP 406
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.1 bits (72), Expect = 0.054
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Frame = +2
Query: 377 SNNKRTMQNDMENGGGDANTNV-SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN 553
++N+ + N G + NV T L + + +T + +++ +GK KLI N
Sbjct: 68 ASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRN 127
Query: 554 R------GYGFVEYEKHEDAEKARAAFNGLLMQGKTL-KVSFALLNPENKVSHKPDTESN 712
R GY FVE+ +A A + N + L K+++A + S +E +
Sbjct: 128 RYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYS 187
Query: 713 LYISHLPPDM 742
+++ L P++
Sbjct: 188 IFVGDLSPNV 197
Score = 30.3 bits (65), Expect = 0.38
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +2
Query: 413 NGGGDANTNVSPTKLMVNYIPEL---MTRDMMYALF-SAMGKIESCKLIAN------RGY 562
+GGG ++S ++ +L + +Y+LF S +S K++ + RGY
Sbjct: 171 SGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGY 230
Query: 563 GFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 682
GFV + D + A A G + + ++V A P++K
Sbjct: 231 GFVRFTDENDQKSALAEMQGQICGDRPIRVGLA--TPKSK 268
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.3 bits (70), Expect = 0.094
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +2
Query: 509 FSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 652
F+ G IE +++ N+ GY FV +E+ D + A A GL++ G+ + V
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.9 bits (69), Expect = 0.12
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 485 TRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAFNGLLMQGKTL 646
T + + LF+ G +++ L +R GY +EY E A+KA N L+ K L
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK-L 80
Query: 647 KVSFALLNPENK 682
+V FA L P +
Sbjct: 81 EVDFAFLEPPER 92
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.1 bits (67), Expect = 0.22
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +2
Query: 428 ANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHED 592
A+ + +L V+ I +T + + A+F G IE L + +G+G+++Y
Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPIS 392
Query: 593 AEKARAAFNGLLMQGKTLKV 652
A A NG + G+ ++V
Sbjct: 393 ARNALEKMNGFDLAGRNMRV 412
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 464 NYIPELMTRDMMYALFSAMGKIESCKLIANR-GYGFVEYEKHEDAEKARAAFNGLLMQGK 640
N++ EL +D+ GK+ ++ N G FV++E + AEKA + G+
Sbjct: 524 NWVQEL-EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGR 582
Query: 641 TLKVS 655
T+K S
Sbjct: 583 TIKAS 587
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.1 bits (67), Expect = 0.22
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Frame = +2
Query: 431 NTNVSPTKLMVNYIPELMTRDMMYALFSAM--GKIESCKLIANRGYGFVEY--EKHEDAE 598
N P K + Y+ L + + S + G IES ++ + F+ + H A
Sbjct: 108 NNTTQPVKTV--YVGNLPPNTPIDEILSCVRTGPIESAWILPEKNCAFISFLDPSHATAF 165
Query: 599 KARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES----NLYISHLPPDMTLERIXTP 766
AA L ++G +KV + + N +S N+++ +LP +T + I
Sbjct: 166 FQDAALKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIRED 225
Query: 767 FSPFG 781
PFG
Sbjct: 226 LEPFG 230
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 617 NGLLMQGKTLKVSFALLN---PEN-KVSHKPDTESNLYISHLPPDMTLERIXTPFSPFG 781
+GL+++ + LK+ + + P N ++ N+YI + +T+ER+ F FG
Sbjct: 380 HGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFG 438
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +2
Query: 557 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSF------ALLNPENKVSHKPDTESNLY 718
G+GFVE++ A A A NG ++ G L++ A + S KP + +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKP-KGTKIL 724
Query: 719 ISHLPPDMTLERIXTPFSPFG 781
I +LP + T + + + +G
Sbjct: 725 IKNLPFEATKKDVQSLLGAYG 745
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Frame = +2
Query: 392 TMQNDMENGGGDANTNV---SPTK-LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR- 556
+M EN + N+ S TK L + + D + +LF G++E + ++
Sbjct: 300 SMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKK 359
Query: 557 -----GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 652
G+ ++++ +DA +A + QG+ L V
Sbjct: 360 TNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +2
Query: 455 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQ 634
L + I + ++ ++F G ++S L N +GF++ + + AEKA+ A +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFA 467
Query: 635 GKTLKVSFAL 664
T++ + +
Sbjct: 468 DTTIRTKWGV 477
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.38
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +2
Query: 434 TNVSPTK-LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARA 610
T PT L V +P ++ + FSA G + S ++++++ F+ ++ E A+
Sbjct: 581 TQHEPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLE 640
Query: 611 AFNG--LLMQGKTLKVSFA-LLNPENKVSH 691
NG + + +SFA + + ++ SH
Sbjct: 641 ELNGKRIFFGSDPVCISFAKVASSSSESSH 670
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.38
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = +2
Query: 452 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKARAA 613
K+ V +P T + F+ G++ L+ + RG+GFV YE +E A +A +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE-NESAVEATMS 306
Query: 614 FNGLLMQGKTLKVSFALLNPENKVSH 691
+ + GK ++V A + SH
Sbjct: 307 QPYITIHGKPVEVKRATPKASLRDSH 332
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.9 bits (64), Expect = 0.50
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +2
Query: 455 LMVNYIPELMTRDMMYALFSAMGKIESC------KLIANRGYGFVEYEKHEDAEKARAAF 616
++V + +T++ + +F G I+ K N+GY ++EY H+ A A
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 617 NGLLMQGKTLKVS 655
N + G+ L VS
Sbjct: 161 NNAELDGEELFVS 173
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.9 bits (64), Expect = 0.50
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 461 VNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKARAAFNG 622
V IP M + + +F G ++S +L+ + +GYGF EY A A N
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNN 68
Query: 623 LLMQGKTLKVSF 658
+ L+V F
Sbjct: 69 YDAGTRRLRVDF 80
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 554 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESN 712
RG+GFV + ED +A NG + TL V A+ E+K + + + N
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR-EDKQNDENEKNEN 309
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 557 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 652
G GFV + HEDA A AFNG + + L++
Sbjct: 287 GTGFVLFASHEDAADA-LAFNGYCLGDRMLEI 317
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 455 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFN 619
L V+ +P + ++ALFSA G ++ +++ V YE A AR A +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALH 56
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +2
Query: 452 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-----GYGFVEYEKHEDAEKARAAF 616
+L V + + + +Y FS + K++ +R G+GFV ++ + KA
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 617 NGLLMQGKTLKVSFALLNPE-NKVSHK 694
NG + + +K+S A + + N+V+ K
Sbjct: 91 NGKYIGSRPVKLSRATSDVKPNEVNEK 117
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 551 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPEN 679
++GYG+V++E E A+ A AA + G+ + + + P N
Sbjct: 303 SKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPAN 345
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +2
Query: 485 TRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDA 595
T + +YALFS G+I + +R G+ FVEY +++DA
Sbjct: 44 TEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDA 86
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 551 NRGYGFVEYEKHEDAEKARAAFNGLLMQ--GKTLKVSFALLNP 673
+R + FVEYE DAE A +G ++ G L+V +A P
Sbjct: 46 SRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQPP 88
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 455 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-----GYGFVEYEKHEDAEKARAAFN 619
L + IP+ + M + GK+ S + +A+ +GF E+E +E +A A N
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALN 200
Query: 620 GLLM 631
++
Sbjct: 201 DFVV 204
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Frame = +2
Query: 431 NTNVSPTK--LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRG------YGFVEYEKH 586
N N+ K L V +P M FS G + ++ NR Y F+E+E
Sbjct: 97 NKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL 156
Query: 587 EDAEKARAAFNGLLMQGKTLK 649
+ A + L+ GK L+
Sbjct: 157 DVANVVAETMHNYLLYGKLLQ 177
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 551 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 661
+RG+G+VE+E D A A +G + G+ ++++ A
Sbjct: 132 SRGFGYVEFET-ADTLSAALALSGEDLMGRPVRITVA 167
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 277 LSYENDGVAGSQVHHYTNEFVFGMLP 200
L NDG+ G QVH +F+ G LP
Sbjct: 192 LGLSNDGIEGIQVHQLV-DFLRGTLP 216
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 619 VECSPRLLSVLMFFILNKAVAAIRYQLAALYFTH 518
V CS + + +L FF L K R L LYF++
Sbjct: 628 VRCSSKSIGLLFFFPLVKVCGVPRDTLQWLYFSN 661
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,418
Number of Sequences: 5004
Number of extensions: 63245
Number of successful extensions: 240
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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