Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L24
         (1372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   3.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   3.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   3.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   7.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   9.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 638 PPPPPPP 658
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 3.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 641 PPPPPPP 661
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 601 LXGPXPPXXXXXPPPPPPPXPPXXXPXXPXXPXPKTXPXP 720
           L  P  P        PPPP P    P  P    P     P
Sbjct: 721 LQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPHDINNP 760


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 601 LXGPXPPXXXXXPPPPPPPXPPXXXPXXPXXPXPKTXPXP 720
           L  P  P        PPPP P    P  P    P     P
Sbjct: 613 LQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPHDINNP 652


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/48 (27%), Positives = 16/48 (33%)
 Frame = +2

Query: 797 PRPXPXXAITXPPPPXPXXXXXXXXXPPPXXLLPHXXLPXFPXLXXXP 940
           P+  P  +I  P P  P         PP   + P    P FP     P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +1

Query: 874 PSXPXPPSSXXPPXFPPSXPXPPXPXSP 957
           P    PP+      +PP    PP P  P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPP 187


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 629 PXXPPPPPPPPXXXRXP 679
           P  PP P PPP     P
Sbjct: 95  PTTPPTPSPPPEERLTP 111


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 922 PSXPXPPXPXSPXTXLSXPCXTXPPP 999
           PS P PP        +S PC T   P
Sbjct: 209 PSTPYPPPGSLGSMGVSVPCGTSGNP 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,475
Number of Sequences: 336
Number of extensions: 3744
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 40796117
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)