Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L24
         (1372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.14 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.29 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.50 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   6.2  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   8.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect(2) = 0.14
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 629 PXXPPPPPPPP 661
           P  P PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.2 bits (50), Expect = 2.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 1244 PPXPXAKPPPPXXXXPXRA 1300
            PP P   PPPP    P  A
Sbjct: 338  PPKPAPPPPPPSSSGPDSA 356



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 637 PPPPPPPXPP 666
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 637 PPPPPPPXPP 666
           P P PPP PP
Sbjct: 339 PKPAPPPPPP 348



 Score = 21.4 bits (43), Expect(2) = 0.14
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 641 PPPPPPPXXXRXP 679
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.29
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 702  QNXPXPXSPXPPXXPPPNH 758
            +N P   SP PP  PP NH
Sbjct: 1849 RNIPVSGSPEPPPPPPRNH 1867



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 638  PPPPPPPP 661
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 638  PPPPPPPP 661
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 640  PPPPPPXP 663
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 643  PPPPPXPP 666
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/36 (33%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
 Frame = +1

Query: 637 PPPPPPPXPPXXXPXXPXXPXPKTXPXP--XPHXPP 738
           P P P P      P     P P   P P   P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
 Frame = +1

Query: 616 PPXXXXXPPPP-PPPXPPXXXP 678
           PP     PPP  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 883 PXPPSSXXPPXFPPSXPXPPXP 948
           P  PS   PP  PP  P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +3

Query: 711 PXPXSPXPPXXPPPNHPXRSXPXPXXTXPRG 803
           P P  P P   P P  P +    P    P+G
Sbjct: 22  PLPNVPQPGRRPFPTFPGQGPFNPKIKWPQG 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,719
Number of Sequences: 438
Number of extensions: 11511
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 47544948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)