Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L22
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...   101   8e-22
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018    101   1e-21
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   0.53 
07_03_0078 - 13147741-13148913                                         30   2.2  
09_01_0024 + 438288-438542,439020-439069,440096-440351                 29   6.7  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    28   8.9  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score =  101 bits (242), Expect = 8e-22
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +3

Query: 102 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 281
           VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A YEKR  
Sbjct: 12  VGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRIT 61

Query: 282 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 401
           ELLKV KDKRALK  KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score =  101 bits (241), Expect = 1e-21
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +3

Query: 102 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 281
           VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A YEKR  
Sbjct: 12  VGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRIT 61

Query: 282 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 401
           ELLKV KDKRALK  KR+LGTH RAK+KREE++ VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 30.3 bits (65), Expect(2) = 0.53
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 753 PPXPXXXXFXFXPXPXGGXGXXFXXXXPXPPPP 851
           PP P        P P  G G  F    P PPPP
Sbjct: 640 PPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPP 672



 Score = 20.6 bits (41), Expect(2) = 0.53
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 834 PXPPPPP 854
           P PPPPP
Sbjct: 690 PPPPPPP 696


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 187 AGLILMALSVIPLRPADILVVLWPF 113
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +3

Query: 258 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 383
           A++E R  E LK ++++ A K LKR+     + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = +3

Query: 165 KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 344
           +A + + A L+ +    S+  ++LV E +G    EK+ +ELL +  +++  ++LK +   
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697

Query: 345 HIRAKRKREELSNVLA 392
               +R + + S VLA
Sbjct: 698 E---ERLQSQESKVLA 710


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,945,252
Number of Sequences: 37544
Number of extensions: 450763
Number of successful extensions: 2458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2324
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)