Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L19
         (1022 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.36 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.63 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 550  WXGRXXPPPPPPP 512
            W  +  PPPPPPP
Sbjct: 1350 WRQQQPPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 789  PPPPPPP 809
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 790  PPPPPPP 810
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 789  PPPPPPP 809
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 790  PPPPPPP 810
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
 Frame = +1

Query: 916  PXPQPP---XPXXPXXXPPPPPXXXXXPPPPTXPXPPP 1020
            P PQP     P  P    PP P     PPP   P  PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNP--SQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.83
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +2

Query: 854 PXPPPPPXXXXXXXXPXXPKTXXPNPPXXXPPXXPP 961
           P P P P           P      PP   PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +2

Query: 818 PTTTPXKKKKXXPXPPPPPXXXXXXXXPXXPKTXXPNPPXXXPPXXPPPPP 970
           P  T   ++     P P P        P   +   PNP    PP  PP  P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQ--RGSPPNPSQGPPPGGPPGAP 55


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 828 VVVGXXXGGGGGG 790
           +VVG   GGGGGG
Sbjct: 39  IVVGANNGGGGGG 51



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 580 PPPPPXXXGXW 548
           PPPPP   G W
Sbjct: 376 PPPPPIRGGEW 386


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 321 TPPPPXXXLKRGPPPPPXXXGXKKXKXXPXFFFXKKK 431
           TPP P       PPPPP   G    K    F    K+
Sbjct: 337 TPPKPAP-----PPPPPSSSGPDSAKLDKIFDIATKE 368



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 988  PPPPTXPXPPP 1020
            PP P  P PPP
Sbjct: 338  PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 789 PPPPPPPXXXP 821
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 926  NPPXXXPPXXPPPPP 970
            N P    P  PPPPP
Sbjct: 1850 NIPVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 544  GRXXPPPPPP 515
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 790  PPPPPPPXXPH 822
            P PPPPP   H
Sbjct: 1857 PEPPPPPPRNH 1867


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 818 PTTTPXKKKKXXPXP 862
           P TTP +KK   P P
Sbjct: 23  PETTPRRKKNKKPLP 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.151    0.538 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,893
Number of Sequences: 438
Number of extensions: 15871
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34104798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)