Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L13
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   115   7e-28
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.058
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  115 bits (276), Expect = 7e-28
 Identities = 56/59 (94%), Positives = 58/59 (98%)
 Frame = +2

Query: 194 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAG 370
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAG
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAG 62



 Score = 87.4 bits (207), Expect = 2e-19
 Identities = 44/61 (72%), Positives = 47/61 (77%)
 Frame = +3

Query: 369 GIIAIYGLVXAVLIAGALQEPANYPLYKXFIHLGAGLAVXFSGLAARXAIGIXXXARXRG 548
           GIIAIYGLV AVLIAG L+EP  Y L+K F+HLGAGLAV FSGLAA  AIGI   A  RG
Sbjct: 62  GIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 121

Query: 549 T 551
           T
Sbjct: 122 T 122


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.058
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +3

Query: 555 SAALPXPPXINSSSXXPPXTXWXPXPTXXPPPLXPPXTXPQXPP 686
           S+  P P      S   P     P P+  PPP  PP   P   P
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 27.9 bits (59), Expect = 0.13
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 777 PXXPXXPNPPPPSXXPXPPXLPPPPPXPXP 866
           P  P   +PP PS  P P   P  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 192 LKIIQSTDPSLELWGRRLLSSS 257
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 813 SXXPXPPXLPPPPP 854
           S  P  P  PPPPP
Sbjct: 335 SDTPPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 777 PXXPXXPNPPPPSXXP 824
           P  P  P PPP S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,828
Number of Sequences: 438
Number of extensions: 7288
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)