Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_L10
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 31 1.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.9
09_02_0543 + 10427321-10428315,10428440-10429154 30 2.9
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 30 2.9
11_06_0546 + 24853167-24853880 29 5.1
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 29 6.7
08_01_0059 - 394001-394708 29 6.7
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.7
07_01_0080 + 587674-588510 28 8.9
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3
Query: 627 PXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPP 752
P P PP P P SP G P P TP ++ P
Sbjct: 49 PHGPPPPPPPSPSPSPSPPAGKPTKPHPESTPPTKTPARSKP 90
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 2.9
Identities = 27/99 (27%), Positives = 29/99 (29%)
Frame = +1
Query: 607 PXTPPXXPPXXPXPXSRXXXILPXHXXVXXXPPTRXXLPXIXFXDKTPPXQCPRXKKXLL 786
P PP PP P P S P PP LP PP P L
Sbjct: 563 PPPPPPPPPPPPLPQSNYASSQP------PPPPPPPPLPNCLVPSPPPP---PPPPPILP 613
Query: 787 SRXKFAXXXLPSXW*PHLXXXPXPXXHPKPXXPSXLCSP 903
+R P H P P P P P+ L P
Sbjct: 614 NRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPP 652
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP P P SP P P P
Sbjct: 37 PPPAPDMPPPPPTPAPQSSPAPPPAPDMTPPPGPGP 72
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +2
Query: 611 PPPPXXXXPXPXXXPAXXGFSPFTXGXXWXPXPEXHSLXSTXGTKPP 751
PPP P PA G P+ G P P ++ G PP
Sbjct: 75 PPPSLYGYAPPQPPPALYGAVPYNYGHPQQPGPPYGAVPYNYGPPPP 121
>11_06_0546 + 24853167-24853880
Length = 237
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 91 NQNEFHENHIFLVRCCFRDRISETLGTSSRKSSAPWRGREMPS 219
N+NEF E +I +V CC I T G + + W +M S
Sbjct: 101 NKNEFLELNILIVECCTVTDIRFTDGAAPKLEKIVWSFTKMNS 143
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +1
Query: 166 GTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITA 306
GTSS SS P R R P Q PP P S +P A
Sbjct: 10 GTSSSSSSLPSRRRRRPPPRLGRRRGGDDQQPPHPPKASSEALPCAA 56
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP PRP +P P P+ +P
Sbjct: 27 PPSPPIRPPPPPTPRPY-APPPPSHPLAPPPPHISP 61
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 606 TXHPPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXP 710
T PP P P P P P SP + G P P
Sbjct: 318 TGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPP 352
>07_01_0080 + 587674-588510
Length = 278
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P PP F R +P G P G++ PL
Sbjct: 111 PPPPPPPPPPPLFTRRSHAPQDNSSGTGVPRFYKLEFPKYDGKDDPL 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,115,660
Number of Sequences: 37544
Number of extensions: 414975
Number of successful extensions: 1911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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