Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_L10
(905 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha... 35 0.47
BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a... 35 0.47
BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, ty... 35 0.47
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 35 0.47
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 35 0.47
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho... 35 0.47
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 35 0.47
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro... 35 0.47
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 35 0.47
AY393190-1|AAS86123.1| 164|Homo sapiens immunoglobulin heavy ch... 33 1.9
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 31 7.6
L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen ... 31 7.6
L25280-1|AAC78500.1| 1388|Homo sapiens type XV collagen protein. 31 7.6
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 31 7.6
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 31 7.6
AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha ... 31 7.6
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 31 7.6
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 31 7.6
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 31 7.6
AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha ... 31 7.6
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 31 7.6
AJ276986-1|CAC81830.1| 126|Homo sapiens immunoglobulin heavy ch... 31 7.6
>L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha 1
protein.
Length = 684
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 330 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 365
>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, alpha
1 protein.
Length = 1336
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 983 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1018
>BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, type
XVIII, alpha 1 protein.
Length = 816
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 463 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 498
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 1163 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1198
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 1398 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1433
>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
variant protein.
Length = 1336
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 983 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1018
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 1166 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1201
>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen protein.
Length = 1336
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 983 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1018
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen protein.
Length = 1516
Score = 34.7 bits (76), Expect = 0.47
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTP 722
PP P P PP FP P S G G P P P
Sbjct: 1163 PPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1198
>AY393190-1|AAS86123.1| 164|Homo sapiens immunoglobulin heavy chain
protein.
Length = 164
Score = 32.7 bits (71), Expect = 1.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 411 LNTNFIQWSSLDFINQGKYCSELVVRGSSW 322
+NT +++WSSL + KY + + GSSW
Sbjct: 87 INTAYLEWSSLKASDSAKYYCSIGLHGSSW 116
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P P P P G P P P G PP+
Sbjct: 80 PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPM 126
>L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen
protein.
Length = 1388
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXD-SPXSXXGXXGXP 704
PP P P PP F RP D P G G P
Sbjct: 1077 PPGAPGLPGPPGFGRPGDPGPPGPPGPPGPP 1107
>L25280-1|AAC78500.1| 1388|Homo sapiens type XV collagen protein.
Length = 1388
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXD-SPXSXXGXXGXP 704
PP P P PP F RP D P G G P
Sbjct: 1077 PPGAPGLPGPPGFGRPGDPGPPGPPGPPGPP 1107
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P P P P G P P P G PP+
Sbjct: 80 PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPM 126
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P P P P G P P P G PP+
Sbjct: 80 PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPM 126
>AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXD-SPXSXXGXXGXP 704
PP P P PP F RP D P G G P
Sbjct: 1077 PPGAPGLPGPPGFGRPGDPGPPGPPGPPGPP 1107
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P P P P G P P P G PP+
Sbjct: 39 PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPM 85
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P P P P G P P P G PP+
Sbjct: 101 PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPM 147
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P P P P G P P P G PP+
Sbjct: 80 PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPM 126
>AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXD-SPXSXXGXXGXP 704
PP P P PP F RP D P G G P
Sbjct: 1077 PPGAPGLPGPPGFGRPGDPGPPGPPGPPGPP 1107
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 615 PPXXPXXPXPPXFPRPXDSPXSXXGXXGXPXPNXTPXDXLXGQNPPL 755
PP P P P P P G P P P G PP+
Sbjct: 80 PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPM 126
>AJ276986-1|CAC81830.1| 126|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 126
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 411 LNTNFIQWSSLDFINQG-KYCSELVVRGSSW 322
+NT ++QWSSL + YC+ V RG SW
Sbjct: 57 INTVYLQWSSLKASDTAIYYCARHVSRGRSW 87
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,524,033
Number of Sequences: 237096
Number of extensions: 2163372
Number of successful extensions: 8937
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8171
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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