Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L09
         (877 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    26   0.45 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   4.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   5.5  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   9.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 702 LKKLLRXWXQTQFQYHEGQESAGLLQNHTCRXPCQ 598
           L KL + W  T   + E  E  G +++H     CQ
Sbjct: 98  LPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQ 132



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 197 GRDHDRVHEDRRGLYLH 147
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 538 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 434
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 574 LVTPVTSSNW*NRQLSKDNSASNGSGD 494
           L+   T+S+   R  +  NSASN SGD
Sbjct: 330 LLRHYTASSKNYRSATGGNSASNSSGD 356


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 510 EALLSLLSCLFYQFEEVTGVTRSESHTPSLGKVXGKCGSVTVRLIPAPRG 659
           E L+S ++ +  +F+E+  + R  +   ++ K  G C S     +  P G
Sbjct: 27  ETLMSDINLIKEEFDELGRLQRICNGEVAVNKCEGSCKSQVQPSVITPTG 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,854
Number of Sequences: 336
Number of extensions: 3992
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)