Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_L09
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 215 3e-56
07_01_0756 + 5819367-5820038,5820847-5821005 212 3e-55
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 42 5e-04
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 2.8
08_01_0784 + 7600691-7601055,7601530-7601765,7601896-7602068,760... 29 3.7
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.9
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 4.9
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 28 8.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 215 bits (526), Expect = 3e-56
Identities = 96/128 (75%), Positives = 116/128 (90%)
Frame = +2
Query: 215 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 394
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 395 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 574
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 575 IGKPHTVP 598
IG+PHTVP
Sbjct: 157 IGQPHTVP 164
Score = 48.4 bits (110), Expect = 7e-06
Identities = 20/25 (80%), Positives = 24/25 (96%)
Frame = +3
Query: 603 KVXGKCGSVTVRLIPAPRGTGIVSA 677
KV GKCGSVTVR++PAPRG+GIV+A
Sbjct: 166 KVTGKCGSVTVRMVPAPRGSGIVAA 190
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 212 bits (518), Expect = 3e-55
Identities = 96/128 (75%), Positives = 115/128 (89%)
Frame = +2
Query: 215 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 394
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 395 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 574
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 575 IGKPHTVP 598
IGKPHTVP
Sbjct: 160 IGKPHTVP 167
Score = 48.4 bits (110), Expect = 7e-06
Identities = 20/25 (80%), Positives = 24/25 (96%)
Frame = +3
Query: 603 KVXGKCGSVTVRLIPAPRGTGIVSA 677
KV GKCGSVTVR++PAPRG+GIV+A
Sbjct: 169 KVTGKCGSVTVRMVPAPRGSGIVAA 193
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 362 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 541
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 542 LPV 550
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 42.3 bits (95), Expect = 5e-04
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 434 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTV 595
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTV 51
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 522 SLLSCLFYQFEEVTGVTRSES-HTPSLGKVXGKCGSVTVRLIPAPRGTGIVS 674
+++ +F E T T S HT S KV K GSVTVR++ P G+ +V+
Sbjct: 27 AIILAMFRCAEGATRETISRKPHTVSC-KVADKYGSVTVRMMLPPMGSSVVA 77
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 613 PXTLPRDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 458
P L D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 352 PDDLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>08_01_0784 +
7600691-7601055,7601530-7601765,7601896-7602068,
7602344-7602430,7602538-7602605,7602732-7602849,
7602983-7603042,7603135-7603257,7603377-7603448
Length = 433
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 715 VHQPSEEAS*XVGADTIPVPRGAGISRTVTEP 620
VH E S VG D VP+ GI +T+T P
Sbjct: 359 VHGTVTEGSSVVGIDPYAVPKSMGIFQTITSP 390
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 496 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 380
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 598 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 440
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +3
Query: 432 HLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTPSLGKVX 611
+L+ +A ++ +W A RK PF L ++ GVT + +P +
Sbjct: 107 NLIAVAVGKLVQIWRSPAFRKEFFPFHLLRTIPGF-------AAGVTAFD-WSPDSSFLL 158
Query: 612 GKCGSVTVRLIPAPRGTG 665
C +T RL+P +G G
Sbjct: 159 ASCKDLTARLLPVKKGLG 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,495,769
Number of Sequences: 37544
Number of extensions: 512074
Number of successful extensions: 1352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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