Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_L09
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 206 2e-53
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 30 1.9
AC006777-4|AAK72310.1| 333|Caenorhabditis elegans Hypothetical ... 29 3.3
AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 29 4.4
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 29 4.4
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 5.8
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 7.6
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 7.6
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 206 bits (502), Expect = 2e-53
Identities = 101/127 (79%), Positives = 109/127 (85%)
Frame = +2
Query: 218 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 397
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 398 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 577
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 578 GKPHTVP 598
G PHTVP
Sbjct: 171 GLPHTVP 177
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +3
Query: 603 KVXGKCGSVTVRLIPAPRGTGIVSAP 680
KV GKC SV VRLIPAPRGTGIVSAP
Sbjct: 179 KVTGKCASVMVRLIPAPRGTGIVSAP 204
Score = 34.7 bits (76), Expect = 0.088
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 703 MAGVQDCYTSARGFNWAPLGKFAXXPIXXHCPXHMPTSPPDLWK 834
MAG++DCYT+A+G + A LG FA + + PDLWK
Sbjct: 212 MAGIEDCYTAAKG-STATLGNFAKATYAALQRTYSYLT-PDLWK 253
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 423 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 247
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 246 VTGT 235
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 423 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 247
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 246 VTGT 235
+ T
Sbjct: 582 QSNT 585
>AC006777-4|AAK72310.1| 333|Caenorhabditis elegans Hypothetical
protein Y46H3D.7 protein.
Length = 333
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 623 FCNSPADSCPSWYWNCVCXHXLRSFFRWLVYRTATPQLVXS 745
FC S +++ +C +FFR LV R+ TP + S
Sbjct: 7 FCGVCEHSADVFHFGAICCEACAAFFRRLVSRSKTPTAICS 47
>AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical
protein Y51A2A.11 protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 629 YRTTLAGDLAKGRCVAFRSCYPSNLFE 549
+ T G L K RCV +C P+N FE
Sbjct: 95 HAVTWIGGLRKARCVNVAACAPANTFE 121
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 629 YRTTLAGDLAKGRCVAFRSCYPSNLFE 549
+ T G L K RCV +C P+N FE
Sbjct: 162 HAVTWIGGLRKARCVNVAACAPANTFE 188
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 559 TSSNW*NRQLSKDNSASNGSG 497
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 373 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 516
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 373 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 516
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,882
Number of Sequences: 27780
Number of extensions: 401312
Number of successful extensions: 1135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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