Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_L04
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0792 + 6166230-6166795,6166879-6166981,6167089-6167227,616... 32 0.50
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 29 3.6
07_01_0720 + 5512638-5513141,5513588-5514607 29 4.7
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109... 29 4.7
07_01_0722 + 5522862-5523410 29 6.2
05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520 29 6.2
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 29 6.2
02_01_0002 - 9542-9762,11085-11196,11328-12575 29 6.2
>07_01_0792 +
6166230-6166795,6166879-6166981,6167089-6167227,
6167641-6167918,6168448-6168612
Length = 416
Score = 32.3 bits (70), Expect = 0.50
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 278 KILVVFPMPGKSHSILGYSVVKHLLKAGHEVTYVT 382
K +++ G H+++G+ + K LL AGH VT +T
Sbjct: 71 KSVLIVNTNGGGHAVIGFYLAKDLLAAGHAVTVLT 105
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 320 ILGYSVVKHLLKAGHEVTYVTPFVEDNHHPKLTQVDVSSNMRLIPKGGLDLKRVLDKEVN 499
++G+S ++ L AG+E T P ++ ++D+SSN RL+ G L K +
Sbjct: 324 LVGFSSLRRLALAGNEFTGAIPVELGQLCGRIVELDLSSN-RLV--GALPASFAKCKSLE 380
Query: 500 VIDNG 514
V+D G
Sbjct: 381 VLDLG 385
>07_01_0720 + 5512638-5513141,5513588-5514607
Length = 507
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 251 ATQSISDAYKILVVFPMPGKSHSILGYSVVKHLLKAGHEVTYVT 382
A S S + +VVFP H I + K L GH VT+VT
Sbjct: 15 AAASSSSSPLHIVVFPWLAFGHMIPFLELSKRLASRGHAVTFVT 58
>06_03_1297 +
29110432-29110542,29110613-29110804,29110893-29110976,
29111115-29111191,29111410-29111476,29111640-29111697,
29111823-29111890,29111981-29112043,29112549-29112651,
29112685-29112845,29112934-29113053,29113300-29113356,
29113646-29113809,29113896-29114055,29114720-29114803,
29115074-29115196,29115368-29115498,29115577-29115658,
29115876-29115963,29116143-29116186,29116264-29116387,
29116450-29116537,29116649-29116849,29116894-29117104,
29117383-29117454,29117587-29117790,29117959-29118087
Length = 1021
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 305 GKSHSILGYSVVKHLLKAGHEVTYVTPFVEDNHHPKLTQVDVSSNMRLIPKGGLD 469
G H+ VV+HL+ AGHEV T E +L + S + I + LD
Sbjct: 28 GFGHATRAIEVVRHLIAAGHEVHVATAVPEFVFTAELPRSPSSQGLLHIRRAILD 82
>07_01_0722 + 5522862-5523410
Length = 182
Score = 28.7 bits (61), Expect = 6.2
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 251 ATQSISDAYKILVVFPMPGKSHSILGYSVVKHLLKAGHEVTYVTPFVEDNHHPKLTQVD- 427
++ S S + +VVFP H I + K L GH VT+V+ + +L +
Sbjct: 19 SSSSSSSSPLHIVVFPWLAFGHMIPFLELSKRLASRGHAVTFVS---TPRNAARLGAIPP 75
Query: 428 -VSSNMRLIPKGGLDLKRV 481
+S+N+R++P LDL V
Sbjct: 76 ALSANLRVVP---LDLPAV 91
>05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520
Length = 841
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 636 NWVLVMLRYSTFHLYGCRPWEPHWLVTXLIDGNLNPALQRGFYVFQYSSIY 788
NW+ R +F L PW+ +LV L D L A ++ Q +IY
Sbjct: 592 NWLTSRARSCSFGLGTRIPWDEKFLVDSLSDSTLYMAYYTIAHILQNGNIY 642
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 305 GKSHSILGYSVVKHLLKAGHEVTYVT 382
G H+ VV+HL+ AGH+V VT
Sbjct: 36 GFGHATRALEVVRHLIAAGHDVHVVT 61
>02_01_0002 - 9542-9762,11085-11196,11328-12575
Length = 526
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 705 WLVTXLIDG----NLNPALQRGFYVFQYSSIYVLAKSQGLWIQFT 827
W + I G +L P+ QR + V +++ Y+LA GL I+F+
Sbjct: 209 WCIAVKIHGVNRISLKPSEQRFYVVNRFTHAYILAVDDGLKIEFS 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,133,009
Number of Sequences: 37544
Number of extensions: 477667
Number of successful extensions: 1166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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