Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L02
         (1062 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   1.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   2.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   5.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   5.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   5.2  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 408 PPPLXXXPPXPPXPXPPXPPXXPGPPPXPXXPXXPGXGXP 527
           P P     P P    PP  P   G  P    P  PG   P
Sbjct: 400 PEPTISTTPRPEWARPPSTPSADGSKPVQTTP-KPGQWVP 438


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 438 PPXPXPPXPPXXPGPPPXPXXPXXPGXGXPXXXGXPPP 551
           P    PP  P  PGPP  P      G   P   G   P
Sbjct: 110 PSGNVPPLTPS-PGPPSHPYTVISNGYSSPMSSGSYDP 146



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 414 PLXXXPPXPPXPXPPXPP 467
           P    PP  P P PP  P
Sbjct: 110 PSGNVPPLTPSPGPPSHP 127


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 454 PPPPPXXRGPPXXPPXPXPXGXGXP 528
           PPPP     PP  P    P     P
Sbjct: 736 PPPPHPHHQPPRNPVGTNPHDINNP 760


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 454 PPPPPXXRGPPXXPPXPXPXGXGXP 528
           PPPP     PP  P    P     P
Sbjct: 628 PPPPHPHHQPPRNPVGTNPHDINNP 652


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 429 PPXPPXPXPPXPPXXP 476
           PP P  P  P PP  P
Sbjct: 175 PPLPQVPPLPLPPIFP 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,750
Number of Sequences: 336
Number of extensions: 4618
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30413615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)