Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L02
         (1062 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.006
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.49 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.7 bits (71), Expect = 0.006
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +1

Query: 391 GTPGXPPPPXXXP--PPHPXXPXPPPPPXXRGPPXXPPXPXP 510
           G PG  P P   P  P     P P   P   GPP  PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.65
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +1

Query: 412 PPXXXPPPHPXXPXPPPPPXXRGPPXXPPXPXPXGXGXPXXXGXPPQXXXXP 567
           P    P P P     P  P    PP     P P G         P Q    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 25.8 bits (54), Expect = 0.65
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 942  PXPPPXXGGXXPPXPAPXPPXPGXPSPPXXXPPXXPP 1052
            P P P      P   +P  P  G   PP   PP  PP
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQG---PPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.86
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 963  GGXXPPXPAPXPPXPGXPSPPXXXPPXXPPP 1055
            G    P  +P  P  G P  P   PP   PP
Sbjct: 22   GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 25.4 bits (53), Expect = 0.86
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
 Frame = +1

Query: 697 PXPPPXXPXGXXPPXP---PPPGXAXGGXPA 780
           P   P  P    PP P   PPPG   G  P+
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +3

Query: 939  PPXPPPXXGGXXPPXPAPXPPXPGXP-SPPXXXP 1037
            P   P       PP P+  PP  G P +PP   P
Sbjct: 27   PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 975  PPXPAPXPPXPGXPSP 1022
            PP PAP PP P    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect = 2.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 430 PPHPXXPXPPPPPXXRGP 483
           PP P    PPPPP   GP
Sbjct: 338 PPKPAP--PPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 439 PXXPXPPPPPXXRGPP 486
           P  P PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,906
Number of Sequences: 438
Number of extensions: 11686
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35427294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)