Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_L01
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    27   2.6  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   4.5  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    27   4.5  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    26   6.0  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   7.9  

>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 364 LGDANGKAKEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVXNTVQESXK 534
           + +A  KA+++LEQ+    +   E L K H +    E+   + +EKL A +    + S +
Sbjct: 52  INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111

Query: 535 L 537
           L
Sbjct: 112 L 112


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 385 AKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 489
           A E   +++ +IER+A    K A  + E+ ATALRE
Sbjct: 157 ASERAREAQSSIERSASLREKQAREEAERAATALRE 192


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 435 LGRALDVLPRLFQSLLGLAVRVSERXPGDSW 343
           +G  +  L RLF SL GL    ++  PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = +1

Query: 382 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVXNTVQESXKLXXKVSSNV 561
           K+++ LE S Q +E    E +   P+V++     +EK ++ V    +E      K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKEE-----KISRNL 185

Query: 562 XETNXKLAP 588
             ++  ++P
Sbjct: 186 RSSSRSISP 194


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 397 LEQSRQNIERTAEELRKAHPDVEK 468
           +EQ+R   E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 439 LRKAHPDVEKNATALREKLQAAVXNTVQE 525
           L  AH D+E   T++RE+L++ +    +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,990
Number of Sequences: 5004
Number of extensions: 31074
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)