Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_K24
(946 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.41
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.72
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 27 3.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.41
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 751 PXXXPPXPLPXPPXPXGTAPXPSPPXXP 834
P P P P PP G P P PP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +1
Query: 778 PXPPXPXGTAPXPSPPXXPXXXXXXXXXXXXXXXXXXXXXXXVLTPXPPPPXXPPP 945
P PP P P P+P P V PPPP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG----VAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 764 PPPPXRXXPLPAVPXPXPPXPXAXV 838
PPPP P PA P P P P A +
Sbjct: 734 PPPPAVIVPTPA-PAPIPVPPPAPI 757
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 740 PVXXXXXXPPPPXRXXPLPAVPXPXPPXPXA 832
P PPPP A P P PP P A
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.72
Identities = 18/66 (27%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Frame = +1
Query: 751 PXXXPPXPLPXPPXPXGTAPXPS-PPXXPXXXXXXXXXXXXXXXXXXXXXXXVLTPXPPP 927
P PP P PP P P PS P P P PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 928 PXXPPP 945
PPP
Sbjct: 200 KVPPPP 205
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 766 PXPLPXPPXPXGTAPXPSPP 825
P P P PP P A P+PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 763 PPXPLPXPPXPXGTAPXPSPPXXP 834
PP P PP P G P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 767 PPPXRXXPLPAVPXPXPPXP 826
PPP P+PA P PP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 23.8 bits (49), Expect(2) = 5.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 910 TPXPPPPXXPPP 945
TP PPP PPP
Sbjct: 1706 TPPPPPMSVPPP 1717
Score = 20.6 bits (41), Expect(2) = 5.8
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = +1
Query: 751 PXXXPPXPLPXPPXPXGTAPXPSPP 825
P PP P +AP P PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPP 1710
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/64 (25%), Positives = 18/64 (28%)
Frame = +1
Query: 751 PXXXPPXPLPXPPXPXGTAPXPSPPXXPXXXXXXXXXXXXXXXXXXXXXXXVLTPXPPPP 930
P PP P P P AP +PP + P PPP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 931 XXPP 942
PP
Sbjct: 1196 EAPP 1199
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +1
Query: 751 PXXXPPXPLPX--PPXPXGTAPXPS-PPXXP 834
P PP P+P PP P ++ PS PP P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 751 PXXXPPXPLPXPPXPXGTAPXPSPPXXP 834
P P +P P P G P P+P P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 517 RVAGPSPIRLRPPERASQKSKPXXTGGXXPTG 612
++ P P++ P AS +S P TG P+G
Sbjct: 354 QIPPPKPMQKFPANAASSESPPNATGNFLPSG 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,486
Number of Sequences: 5004
Number of extensions: 41404
Number of successful extensions: 234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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